Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:11 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 656/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ERSSA 1.23.0 (landing page) Zixuan Shao
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the ERSSA package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ERSSA |
Version: 1.23.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ERSSA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ERSSA_1.23.0.tar.gz |
StartedAt: 2024-05-19 12:47:40 -0400 (Sun, 19 May 2024) |
EndedAt: 2024-05-19 12:52:36 -0400 (Sun, 19 May 2024) |
EllapsedTime: 296.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ERSSA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ERSSA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ERSSA_1.23.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/ERSSA.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ERSSA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ERSSA’ version ‘1.23.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ERSSA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘apeglm’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) erssa.Rd:87: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) erssa.Rd:88: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) erssa.Rd:89: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) erssa.Rd:90-91: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) erssa.Rd:92-94: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) erssa.Rd:95-97: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) erssa.Rd:98-100: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ggplot2_TPR_FPRPlot.Rd:32-33: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ggplot2_TPR_FPRPlot.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ggplot2_TPR_FPRPlot.Rd:35-37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ggplot2_dotplot.Rd:20-21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ggplot2_dotplot.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ggplot2_dotplot.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ggplot2_intersectPlot.Rd:20-21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ggplot2_intersectPlot.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ggplot2_intersectPlot.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ggplot2_intersectPlot.Rd:25-26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ggplot2_intersectPlot.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ggplot2_marginPlot.Rd:23-24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) ggplot2_marginPlot.Rd:25-26: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed erssa_deseq2_parallel 35.455 0.404 35.979 erssa_deseq2 33.990 0.387 34.597 erssa 12.235 0.165 12.454 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/ERSSA.Rcheck/00check.log’ for details.
ERSSA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ERSSA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘ERSSA’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ERSSA)
ERSSA.Rcheck/ERSSA-Ex.timings
name | user | system | elapsed | |
comb_gen | 0.007 | 0.003 | 0.010 | |
count_filter | 0.004 | 0.001 | 0.005 | |
erssa | 12.235 | 0.165 | 12.454 | |
erssa_deseq2 | 33.990 | 0.387 | 34.597 | |
erssa_deseq2_parallel | 35.455 | 0.404 | 35.979 | |
erssa_edger | 2.338 | 0.030 | 2.385 | |
erssa_edger_parallel | 4.869 | 0.024 | 4.905 | |
ggplot2_TPR_FPRPlot | 0.482 | 0.005 | 0.488 | |
ggplot2_dotplot | 0.541 | 0.004 | 0.547 | |
ggplot2_intersectPlot | 0.528 | 0.006 | 0.536 | |
ggplot2_marginPlot | 0.442 | 0.007 | 0.451 | |