| Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:09 -0400 (Mon, 20 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 361/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CluMSID 1.21.0 (landing page) Tobias Depke
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
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To the developers/maintainers of the CluMSID package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CluMSID |
| Version: 1.21.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CluMSID |
| StartedAt: 2024-05-18 15:31:04 -0400 (Sat, 18 May 2024) |
| EndedAt: 2024-05-18 15:35:06 -0400 (Sat, 18 May 2024) |
| EllapsedTime: 242.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CluMSID
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* checking for file ‘CluMSID/DESCRIPTION’ ... OK
* preparing ‘CluMSID’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CluMSID_DI-MSMS.Rmd’ using rmarkdown
2024-05-18 15:32:19.062 R[29339:60455111] XType: Using static font registry.
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CluMSID DI-MS/MS Tutorial", and the latter is "Clustering Spectra from High Resolution DI-MS/MS Data Using CluMSID". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CluMSID_DI-MSMS.Rmd’
--- re-building ‘CluMSID_GC-EI-MS.Rmd’ using rmarkdown
Quitting from lines at lines 127-130 [runCAMERA] (CluMSID_GC-EI-MS.Rmd)
Error: processing vignette 'CluMSID_GC-EI-MS.Rmd' failed with diagnostics:
wrong args for environment subassignment
--- failed re-building ‘CluMSID_GC-EI-MS.Rmd’
--- re-building ‘CluMSID_MTBLS.Rmd’ using rmarkdown
Quitting from lines at lines 237-238 [dendro] (CluMSID_MTBLS.Rmd)
Error: processing vignette 'CluMSID_MTBLS.Rmd' failed with diagnostics:
QuartzBitmap_Output - unable to open file '/tmp/RtmpNXYu0m/file729b422100e9'
--- failed re-building ‘CluMSID_MTBLS.Rmd’
--- re-building ‘CluMSID_lowres-LC-MSMS.Rmd’ using rmarkdown
Quitting from lines at lines 136-137 [MDS] (CluMSID_lowres-LC-MSMS.Rmd)
Error: processing vignette 'CluMSID_lowres-LC-MSMS.Rmd' failed with diagnostics:
QuartzBitmap_Output - unable to open file '/tmp/RtmpNXYu0m/file729b2de4d3aa'
--- failed re-building ‘CluMSID_lowres-LC-MSMS.Rmd’
--- re-building ‘CluMSID_tutorial.Rmd’ using rmarkdown
Quitting from lines at lines 504-505 [MDSplotplot_1] (CluMSID_tutorial.Rmd)
Error: processing vignette 'CluMSID_tutorial.Rmd' failed with diagnostics:
QuartzBitmap_Output - unable to open file '/tmp/RtmpNXYu0m/file729b2d08f9da'
--- failed re-building ‘CluMSID_tutorial.Rmd’
SUMMARY: processing the following files failed:
‘CluMSID_GC-EI-MS.Rmd’ ‘CluMSID_MTBLS.Rmd’
‘CluMSID_lowres-LC-MSMS.Rmd’ ‘CluMSID_tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted