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This page was generated on 2024-05-13 11:32:01 -0400 (Mon, 13 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4378
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 304/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Cepo 1.11.0  (landing page)
Hani Jieun Kim
Snapshot Date: 2024-05-11 09:00:03 -0400 (Sat, 11 May 2024)
git_url: https://git.bioconductor.org/packages/Cepo
git_branch: devel
git_last_commit: 4918ee6
git_last_commit_date: 2024-04-30 11:38:35 -0400 (Tue, 30 Apr 2024)
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for Cepo on kjohnson1


To the developers/maintainers of the Cepo package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: Cepo
Version: 1.11.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Cepo
StartedAt: 2024-05-11 14:57:27 -0400 (Sat, 11 May 2024)
EndedAt: 2024-05-11 14:59:18 -0400 (Sat, 11 May 2024)
EllapsedTime: 110.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Cepo
###
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* checking for file ‘Cepo/DESCRIPTION’ ... OK
* preparing ‘Cepo’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cepo.Rmd’ using rmarkdown
2024-05-11 14:58:36.074 R[99248:48944007] XType: Using static font registry.

Quitting from lines  at lines 284-297 [gsea] (cepo.Rmd)
Error: processing vignette 'cepo.Rmd' failed with diagnostics:
unable to find an inherited method for function 'geneIds' for signature 'object = "list"'
--- failed re-building ‘cepo.Rmd’

SUMMARY: processing the following file failed:
  ‘cepo.Rmd’

Error: Vignette re-building failed.
Execution halted