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This page was generated on 2024-05-13 11:32:02 -0400 (Mon, 13 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4378
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 434/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
COTAN 2.5.1  (landing page)
Galfrè Silvia Giulia
Snapshot Date: 2024-05-11 09:00:03 -0400 (Sat, 11 May 2024)
git_url: https://git.bioconductor.org/packages/COTAN
git_branch: devel
git_last_commit: 66f9f38
git_last_commit_date: 2024-05-06 12:12:11 -0400 (Mon, 06 May 2024)
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for COTAN on kjohnson1


To the developers/maintainers of the COTAN package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: COTAN
Version: 2.5.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data COTAN
StartedAt: 2024-05-11 16:02:33 -0400 (Sat, 11 May 2024)
EndedAt: 2024-05-11 16:03:48 -0400 (Sat, 11 May 2024)
EllapsedTime: 75.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data COTAN
###
##############################################################################
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* checking for file ‘COTAN/DESCRIPTION’ ... OK
* preparing ‘COTAN’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Guided_tutorial_v2.Rmd’ using rmarkdown
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2861nnn/GSM2861514/suppl//GSM2861514_E175_Only_Cortical_Cells_DGE.txt.gz?tool=geoquery'
Content type 'application/x-gzip' length 1509523 bytes (1.4 MB)
==================================================
downloaded 1.4 MB


Quitting from lines  at lines 64-88 [unnamed-chunk-4] (Guided_tutorial_v2.Rmd)
Error: processing vignette 'Guided_tutorial_v2.Rmd' failed with diagnostics:
Lantern is not loaded. Please use `install_torch()` to install additional dependencies.
--- failed re-building ‘Guided_tutorial_v2.Rmd’

SUMMARY: processing the following file failed:
  ‘Guided_tutorial_v2.Rmd’

Error: Vignette re-building failed.
Execution halted