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This page was generated on 2024-05-20 11:32:08 -0400 (Mon, 20 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4381
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 183/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocOncoTK 1.25.0  (landing page)
VJ Carey
Snapshot Date: 2024-05-18 09:00:01 -0400 (Sat, 18 May 2024)
git_url: https://git.bioconductor.org/packages/BiocOncoTK
git_branch: devel
git_last_commit: dece95f
git_last_commit_date: 2024-04-30 11:06:23 -0400 (Tue, 30 Apr 2024)
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for BiocOncoTK on kjohnson1


To the developers/maintainers of the BiocOncoTK package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BiocOncoTK
Version: 1.25.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocOncoTK
StartedAt: 2024-05-18 14:10:01 -0400 (Sat, 18 May 2024)
EndedAt: 2024-05-18 14:11:40 -0400 (Sat, 18 May 2024)
EllapsedTime: 98.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocOncoTK
###
##############################################################################
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* checking for file ‘BiocOncoTK/DESCRIPTION’ ... OK
* preparing ‘BiocOncoTK’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BiocOncoTK.Rmd’ using rmarkdown

Quitting from lines  at lines 18-31 [setup] (BiocOncoTK.Rmd)
Error: processing vignette 'BiocOncoTK.Rmd' failed with diagnostics:
there is no package called 'restfulSE'
--- failed re-building ‘BiocOncoTK.Rmd’

--- re-building ‘curatedMSIData.Rmd’ using rmarkdown
2024-05-18 14:11:24.673 R[51881:60242981] XType: Using static font registry.
--- finished re-building ‘curatedMSIData.Rmd’

--- re-building ‘maptcga.Rmd’ using rmarkdown
--- finished re-building ‘maptcga.Rmd’

SUMMARY: processing the following file failed:
  ‘BiocOncoTK.Rmd’

Error: Vignette re-building failed.
Execution halted