Back to Mac ARM64 build report for BioC 3.20 |
|
This page was generated on 2024-05-13 11:32:00 -0400 (Mon, 13 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4378 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 11/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ACE 1.23.0 (landing page) Jos B Poell
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the ACE package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ACE |
Version: 1.23.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ACE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ACE_1.23.0.tar.gz |
StartedAt: 2024-05-12 04:40:59 -0400 (Sun, 12 May 2024) |
EndedAt: 2024-05-12 04:43:38 -0400 (Sun, 12 May 2024) |
EllapsedTime: 158.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ACE.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ACE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ACE_1.23.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/ACE.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ACE/DESCRIPTION’ ... OK * this is package ‘ACE’ version ‘1.23.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ACE’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘QDNAseq:::sdDiffTrim’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE squaremodel: no visible binding for global variable ‘cellularity’ Undefined global functions or variables: cellularity * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed squaremodelsummary 6.941 0.073 7.017 squaremodel 6.348 0.146 6.507 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/ACE.Rcheck/00check.log’ for details.
ACE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ACE ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘ACE’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ACE)
ACE.Rcheck/ACE-Ex.timings
name | user | system | elapsed | |
ACEcall | 1.774 | 0.301 | 2.078 | |
analyzegenomiclocations | 0.020 | 0.003 | 0.023 | |
compresstemplate | 0.038 | 0.005 | 0.044 | |
copyNumbersSegmented | 1.111 | 0.049 | 1.161 | |
correlationmatrix | 0.120 | 0.003 | 0.123 | |
forcesegmentsontemplate | 0.436 | 0.010 | 0.448 | |
getadjustedsegments | 0.230 | 0.007 | 0.237 | |
linkvariants | 0.024 | 0.002 | 0.026 | |
loopsquaremodel | 4.282 | 0.069 | 4.351 | |
objectsampletotemplate | 0.009 | 0.002 | 0.011 | |
postanalysisloop | 0 | 0 | 0 | |
runACE | 0.001 | 0.000 | 0.001 | |
singlemodel | 0.772 | 0.035 | 0.824 | |
singleplot | 1.332 | 0.061 | 1.395 | |
squaremodel | 6.348 | 0.146 | 6.507 | |
squaremodelsummary | 6.941 | 0.073 | 7.017 | |
templatefromequalsegments | 0.026 | 0.003 | 0.029 | |
twosamplecompare | 3.222 | 0.117 | 3.344 | |