Back to Long Tests report for BioC 3.20

This page was generated on 2024-05-18 23:55:02 -0400 (Sat, 18 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4666
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4401
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4428
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/32HostnameOS / ArchCHECK
biodbNcbi 1.9.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-05-18 09:55:01 -0400 (Sat, 18 May 2024)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: devel
git_last_commit: 347e93f
git_last_commit_date: 2024-04-30 11:41:09 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR  
palomino4Windows Server 2022 Datacenter / x64  WARNINGS  
merida1macOS 12.7.4 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on palomino4


To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbNcbi
Version: 1.9.0
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.9.0.tar.gz
StartedAt: 2024-05-18 16:05:38 -0400 (Sat, 18 May 2024)
EndedAt: 2024-05-18 16:08:14 -0400 (Sat, 18 May 2024)
EllapsedTime: 155.9 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-05-18 16:06:23.824][biodb::testContext]
biodb.INFO [2024-05-18 16:06:23.827][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:06:23.828][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-05-18 16:06:23.829][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:06:23.830][biodb::testContext]
biodb.INFO [2024-05-18 16:06:23.836][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-05-18 16:06:23.839][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-18 16:06:23.847][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:06:23.848][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-18 16:06:23.849][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-18 16:06:23.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.854][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-18 16:06:23.870][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-18 16:06:23.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.875][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-18 16:06:23.877][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-18 16:06:23.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.881][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-18 16:06:23.882][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-18 16:06:23.884][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-18 16:06:23.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.888][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-18 16:06:23.889][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-18 16:06:23.890][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-18 16:06:23.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.895][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-18 16:06:23.896][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-18 16:06:23.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.901][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-18 16:06:23.902][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-18 16:06:23.903][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-18 16:06:23.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.907][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-18 16:06:23.909][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-18 16:06:23.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.913][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-18 16:06:23.914][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-18 16:06:23.916][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-18 16:06:23.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.920][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:06:23.921][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-18 16:06:23.922][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-18 16:06:23.924][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-18 16:06:23.925][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-18 16:06:23.926][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-18 16:06:23.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.931][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-18 16:06:23.932][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-18 16:06:23.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.936][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-18 16:06:23.937][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-18 16:06:23.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.942][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-18 16:06:23.943][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-18 16:06:23.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.948][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-18 16:06:23.949][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-18 16:06:23.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.953][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-18 16:06:23.955][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-18 16:06:23.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.959][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:06:23.960][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-18 16:06:23.964][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-18 16:06:23.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.968][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-18 16:06:23.970][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-18 16:06:23.971][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-18 16:06:23.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:23.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:23.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:23.977][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-18 16:06:24.012][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.026][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-18 16:06:24.027][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.028][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:24.030][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.031][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.032][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.033][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.034][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:06:24.035][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:24.037][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.038][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-18 16:06:24.039][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:24.040][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.041][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.043][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:06:24.043][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:06:24.043][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:06:24.043][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:06:24.043][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:06:24.044][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:06:24.045][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.046][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.047][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:24.048][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.050][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.051][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.052][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.053][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:24.054][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:24.055][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.056][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.058][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-18 16:06:24.060][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.061][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:06:24.062][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.063][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:24.065][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.066][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.067][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.068][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.069][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:06:24.070][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:24.072][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.073][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-18 16:06:24.074][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:24.075][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.076][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.078][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:06:24.078][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:06:24.078][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:06:24.078][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:06:24.078][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:06:24.079][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:06:24.080][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.081][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.082][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:24.084][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.085][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.086][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.087][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.088][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:24.089][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:24.090][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.092][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.093][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-18 16:06:24.095][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.096][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-18 16:06:24.097][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.099][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:24.100][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.101][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.102][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.104][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.105][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:06:24.106][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:24.107][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.108][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-18 16:06:24.110][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:24.111][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.112][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.113][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.114][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:06:24.116][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.117][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.118][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:24.119][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.120][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.121][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.123][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.124][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:24.125][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:24.126][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.127][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.128][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-18 16:06:24.130][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.132][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:06:24.133][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.134][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:24.135][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.136][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.138][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.139][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.140][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:06:24.141][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:24.143][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.144][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-18 16:06:24.145][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:24.146][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.147][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.149][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.150][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:06:24.151][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.152][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.153][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:24.154][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.155][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.157][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.158][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.159][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:24.160][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:24.161][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.163][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.166][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:06:24.167][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.267][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-18 16:06:24.272][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-18 16:06:24.273][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-18 16:06:24.275][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-18 16:06:24.276][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-18 16:06:24.278][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-18 16:06:24.279][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-18 16:06:24.281][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-18 16:06:24.283][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-18 16:06:24.284][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-18 16:06:24.286][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-18 16:06:24.287][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-18 16:06:24.289][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-18 16:06:24.290][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-18 16:06:24.292][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:06:24.293][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:06:24.295][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-18 16:06:24.297][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-18 16:06:24.298][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-18 16:06:24.300][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-18 16:06:24.301][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-18 16:06:24.303][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-18 16:06:24.304][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-18 16:06:24.306][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-18 16:06:24.308][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-18 16:06:24.309][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-18 16:06:24.311][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-18 16:06:24.312][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-18 16:06:24.314][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-18 16:06:24.315][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-18 16:06:24.317][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-18 16:06:24.318][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-18 16:06:24.320][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-18 16:06:24.322][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-18 16:06:24.323][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-18 16:06:24.325][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-18 16:06:24.326][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-18 16:06:24.328][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-18 16:06:24.329][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-18 16:06:24.331][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-18 16:06:24.333][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-18 16:06:24.334][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-18 16:06:24.336][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-18 16:06:24.337][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-18 16:06:24.339][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-18 16:06:24.340][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:06:24.342][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-18 16:06:24.344][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-18 16:06:24.345][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-18 16:06:24.347][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-18 16:06:24.348][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-18 16:06:24.350][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-18 16:06:24.351][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-18 16:06:24.353][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-18 16:06:24.354][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-18 16:06:24.356][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-18 16:06:24.357][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-18 16:06:24.359][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-18 16:06:24.361][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-18 16:06:24.362][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-18 16:06:24.364][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-18 16:06:24.365][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-18 16:06:24.367][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-18 16:06:24.368][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-18 16:06:24.370][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-18 16:06:24.371][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-18 16:06:24.373][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-18 16:06:24.375][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-18 16:06:24.376][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-18 16:06:24.378][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-18 16:06:24.379][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-18 16:06:24.381][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-18 16:06:24.382][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-18 16:06:24.384][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-18 16:06:24.385][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-18 16:06:24.387][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-18 16:06:24.389][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-18 16:06:24.390][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-18 16:06:24.392][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-18 16:06:24.393][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-18 16:06:24.395][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-18 16:06:24.402][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-18 16:06:24.404][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-18 16:06:24.438][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-18 16:06:24.441][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-05-18 16:06:24.444][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:06:24.445][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.447][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:24.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:24.584][bdb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-05-18 16:06:24.594][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:06:24.596][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.597][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-05-18 16:06:24.598][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.600][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:24.601][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.602][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.603][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.604][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.606][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-05-18 16:06:24.607][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:24.608][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.609][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-05-18 16:06:24.610][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:24.612][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-05-18 16:06:24.612][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-05-18 16:06:24.613][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.614][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.615][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:06:24.617][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.618][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.619][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:24.620][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.621][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.622][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.624][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:06:24.624][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-05-18 16:06:24.625][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:24.626][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:24.627][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.628][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.630][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-05-18 16:06:24.632][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.633][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-05-18 16:06:24.661][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.663][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:24.664][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.665][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.666][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.668][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.669][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:06:24.670][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:24.671][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.673][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-05-18 16:06:24.674][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:24.675][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-05-18 16:06:24.675][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-05-18 16:06:24.675][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-05-18 16:06:24.675][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-05-18 16:06:24.675][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-05-18 16:06:24.675][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-05-18 16:06:24.676][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.677][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:06:24.679][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:06:24.680][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.681][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.682][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:24.683][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.684][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.686][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.687][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:06:24.687][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:06:24.688][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:24.689][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:24.690][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.691][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.693][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-18 16:06:24.695][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.696][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-05-18 16:06:24.698][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.699][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:24.700][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.701][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.702][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.704][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.705][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:06:24.706][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:24.707][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.708][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-05-18 16:06:24.710][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:24.711][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:24.712][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.714][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:06:24.714][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:06:24.714][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:06:24.715][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:06:24.716][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.717][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.718][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:24.719][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.720][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.722][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.723][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:06:24.723][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:06:24.723][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:06:24.724][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:24.725][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:24.726][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.727][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:06:24.729][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-18 16:06:24.731][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.732][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-05-18 16:06:24.733][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.735][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:24.736][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.737][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.738][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.739][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.741][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:06:24.742][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:24.743][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.744][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-05-18 16:06:24.746][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:24.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-05-18 16:06:24.747][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:06:24.748][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:24.749][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:24.750][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:06:24.752][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.753][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.754][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:24.755][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:24.756][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:24.757][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:24.759][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:06:24.759][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:06:24.759][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:06:24.760][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:24.761][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:24.762][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:24.763][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:06:24.769][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-05-18 16:06:24.771][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:06:24.772][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:06:24.774][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-05-18 16:06:24.777][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:06:24.779][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-05-18 16:06:24.802][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:06:24.804][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-05-18 16:06:24.808][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:06:24.812][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-05-18 16:06:24.816][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:24.817][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:24.819][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-05-18 16:06:24.820][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:24.822][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:24.823][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-05-18 16:06:24.837][biodb::testThat]
biodb.INFO [2024-05-18 16:06:24.839][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-18 16:06:24.840][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:06:24.842][biodb::testThat]
biodb.TRACE[2024-05-18 16:06:24.850][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-05-18 16:06:24.853][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:24.857][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:06:24.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:24.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:24.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:24.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:24.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:24.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:24.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:24.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:24.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:24.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:24.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:24.942][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:24.957][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:24.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:24.959][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:24.985][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:24.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:24.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:24.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:24.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:24.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:24.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:24.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:24.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:24.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:24.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:25.084][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-05-18 16:06:25.087][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.093][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.119][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:25.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:25.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.124][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:25.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:25.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.128][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:25.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:25.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.133][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:25.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:25.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.280][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.282][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.285][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.308][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:25.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.316][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.323][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.331][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:25.333][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.336][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.338][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:25.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.360][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.362][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.366][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.376][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.382][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.410][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-05-18 16:06:25.441][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:25.443][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:06:25.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:25.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:25.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:25.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:25.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:25.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:25.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:25.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.494][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:25.496][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.498][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.500][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:25.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:25.555][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-05-18 16:06:25.573][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.579][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.609][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:25.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:25.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.614][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:25.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:25.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.619][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:25.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:25.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.624][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:25.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:25.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:25.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.733][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.737][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.753][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:25.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.758][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.763][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.768][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:25.770][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.777][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.778][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:25.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.793][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.795][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:25.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.797][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:25.804][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:25.806][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:25.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:25.808][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:06:25.821][biodb::testThat]
biodb.INFO [2024-05-18 16:06:25.822][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-18 16:06:25.823][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:06:25.824][biodb::testThat]
biodb.DEBUG[2024-05-18 16:06:25.827][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-05-18 16:06:25.833][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-18 16:06:25.839][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.INFO [2024-05-18 16:06:25.841][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704" for "ncbi.ccds-c3bf0257a03be04fd46e362b99907704".
biodb.TRACE[2024-05-18 16:06:25.843][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-05-18 16:06:25.844][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:06:25.846][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:06:25.847][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:06:25.848][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:06:25.849][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-18 16:06:25.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:25.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:25.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:25.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:25.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:25.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:25.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:25.870][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-05-18 16:06:25.889][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:06:25.890][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:06:25.892][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2024-05-18 16:06:27.413][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2024-05-18 16:06:28.556][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:06:28.559][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2024-05-18 16:06:28.575][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2024-05-18 16:06:28.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:28.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:28.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:28.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:28.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:28.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:28.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:28.660][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2024-05-18 16:06:28.675][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:06:28.676][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:06:28.689][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2024-05-18 16:06:30.045][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2024-05-18 16:06:31.349][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:06:31.353][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2024-05-18 16:06:31.358][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2024-05-18 16:06:31.362][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2024-05-18 16:06:31.367][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:06:31.368][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-05-18 16:06:31.370][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:06:31.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:31.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:31.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:31.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:31.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:31.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:31.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:31.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.408][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:31.410][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:31.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.414][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:31.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:31.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:31.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:31.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:31.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:31.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:31.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:31.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:31.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:31.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:31.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:31.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:31.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:31.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:31.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:31.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.490][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:31.491][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:31.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.494][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.495][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:31.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:31.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:31.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:31.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:31.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:31.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:31.569][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-05-18 16:06:31.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:06:31.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:06:31.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:06:31.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:06:31.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:06:31.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:06:31.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:06:31.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:06:31.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:06:31.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:06:31.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:06:31.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:06:31.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:06:31.617][biodb::testThat]
biodb.INFO [2024-05-18 16:06:31.619][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-18 16:06:31.620][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:06:31.621][biodb::testThat]
biodb.INFO [2024-05-18 16:06:31.630][biodb::testThat]
biodb.INFO [2024-05-18 16:06:31.631][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-18 16:06:31.632][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:06:31.634][biodb::testThat]
biodb.WARN [2024-05-18 16:06:31.651][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-05-18 16:06:31.668][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-05-18 16:06:31.680][biodb::testThat]
biodb.INFO [2024-05-18 16:06:31.682][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-18 16:06:31.683][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:06:31.684][biodb::testThat]
biodb.TRACE[2024-05-18 16:06:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:31.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.719][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:31.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:31.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:31.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:31.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.729][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:31.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:31.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.734][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:31.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:31.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.739][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:31.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:31.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.752][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:31.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:31.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.757][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:31.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:31.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.762][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:31.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:31.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.767][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:31.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:31.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.772][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:31.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:31.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:31.777][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:31.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:31.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:31.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:06:31.790][biodb::testThat]
biodb.INFO [2024-05-18 16:06:31.791][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-18 16:06:31.792][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:06:31.793][biodb::testThat]
biodb.INFO [2024-05-18 16:06:31.805][biodb::testThat]
biodb.INFO [2024-05-18 16:06:31.806][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-18 16:06:31.808][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:06:31.814][biodb::testThat]
biodb.INFO [2024-05-18 16:06:31.824][biodb::testThat]
biodb.INFO [2024-05-18 16:06:31.826][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-18 16:06:31.827][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:06:31.828][biodb::testThat]
biodb.DEBUG[2024-05-18 16:06:31.832][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-05-18 16:06:33.280][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-05-18 16:06:34.673][biodb::testThat]
biodb.INFO [2024-05-18 16:06:34.674][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-18 16:06:34.675][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:06:34.677][biodb::testThat]
biodb.INFO [2024-05-18 16:06:34.685][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-18 16:06:34.687][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-05-18 16:06:34.688][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-05-18 16:06:34.689][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-18 16:06:34.690][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:34.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:34.692][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:34.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:34.695][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-18 16:06:34.706][biodb::testContext]
biodb.INFO [2024-05-18 16:06:34.707][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:06:34.708][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-05-18 16:06:34.709][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:06:34.710][biodb::testContext]
biodb.INFO [2024-05-18 16:06:34.713][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-05-18 16:06:34.715][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-18 16:06:34.721][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:06:34.722][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-18 16:06:34.724][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-18 16:06:34.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.728][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-18 16:06:34.729][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-18 16:06:34.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.734][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-18 16:06:34.735][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-18 16:06:34.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.739][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-18 16:06:34.741][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-18 16:06:34.742][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-18 16:06:34.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.746][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-18 16:06:34.748][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-18 16:06:34.749][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-18 16:06:34.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.753][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-18 16:06:34.755][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-18 16:06:34.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.759][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-18 16:06:34.760][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-18 16:06:34.762][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-18 16:06:34.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.766][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-18 16:06:34.767][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-18 16:06:34.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.779][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-18 16:06:34.780][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-18 16:06:34.781][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-18 16:06:34.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.786][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:06:34.787][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-18 16:06:34.788][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-18 16:06:34.789][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-18 16:06:34.790][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-18 16:06:34.792][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-18 16:06:34.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.796][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-18 16:06:34.798][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-18 16:06:34.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.802][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-18 16:06:34.803][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-18 16:06:34.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.808][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-18 16:06:34.809][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-18 16:06:34.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.814][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-18 16:06:34.815][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-18 16:06:34.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.819][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-18 16:06:34.821][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-18 16:06:34.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.825][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:06:34.826][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-18 16:06:34.830][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-18 16:06:34.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.834][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-18 16:06:34.836][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-18 16:06:34.837][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-18 16:06:34.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:34.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:34.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:34.841][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-18 16:06:34.843][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:34.845][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-18 16:06:34.846][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.847][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:34.848][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.850][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:34.851][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:34.852][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:34.853][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:06:34.854][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:34.856][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.857][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-18 16:06:34.858][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:34.859][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:34.860][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.862][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:06:34.862][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:06:34.862][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:06:34.862][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:06:34.862][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:06:34.863][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:06:34.864][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:34.865][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:34.866][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:34.867][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:34.868][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:34.870][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:34.871][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:34.872][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:34.873][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:34.874][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:34.876][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:34.878][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-18 16:06:34.881][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:34.882][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:06:34.884][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.886][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:34.888][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.889][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:34.891][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:34.893][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:34.894][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:06:34.896][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:34.898][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.900][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-18 16:06:34.901][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:34.903][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:34.905][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.907][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:06:34.907][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:06:34.907][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:06:34.907][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:06:34.907][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:06:34.909][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:06:34.918][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:34.920][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:34.921][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:34.923][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:34.924][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:34.925][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:34.926][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:34.927][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:34.928][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:34.929][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:34.931][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:34.932][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-18 16:06:34.934][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.935][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-18 16:06:34.936][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.938][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:34.939][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.940][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:34.941][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:34.942][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:34.944][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:06:34.945][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:34.946][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:34.947][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-18 16:06:34.948][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:34.950][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:34.951][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.952][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:34.953][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:06:34.954][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:34.955][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:34.957][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:34.958][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:34.959][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:34.960][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:34.961][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:34.962][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:34.963][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:34.965][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:34.966][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:34.967][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-18 16:06:34.969][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.970][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:06:34.971][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.973][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:34.974][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.975][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:34.976][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:34.977][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:34.979][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:06:34.980][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:34.981][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:34.982][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-18 16:06:34.983][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:34.985][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:34.986][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:34.987][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:34.988][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:06:34.989][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:34.990][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:34.992][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:34.993][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:34.994][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:34.995][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:34.996][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:34.997][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:34.998][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:35.000][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:35.001][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:35.002][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:06:35.003][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.103][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-18 16:06:35.105][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-18 16:06:35.106][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-18 16:06:35.108][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-18 16:06:35.109][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-18 16:06:35.111][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-18 16:06:35.113][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-18 16:06:35.114][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-18 16:06:35.116][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-18 16:06:35.117][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-18 16:06:35.119][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-18 16:06:35.120][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-18 16:06:35.122][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-18 16:06:35.123][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-18 16:06:35.125][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:06:35.127][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:06:35.128][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-18 16:06:35.130][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-18 16:06:35.131][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-18 16:06:35.133][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-18 16:06:35.134][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-18 16:06:35.136][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-18 16:06:35.138][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-18 16:06:35.139][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-18 16:06:35.141][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-18 16:06:35.142][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-18 16:06:35.144][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-18 16:06:35.146][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-18 16:06:35.147][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-18 16:06:35.149][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-18 16:06:35.151][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-18 16:06:35.152][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-18 16:06:35.154][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-18 16:06:35.155][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-18 16:06:35.157][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-18 16:06:35.158][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-18 16:06:35.165][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-18 16:06:35.167][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-18 16:06:35.168][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-18 16:06:35.170][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-18 16:06:35.171][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-18 16:06:35.173][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-18 16:06:35.174][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-18 16:06:35.176][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-18 16:06:35.178][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-18 16:06:35.179][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:06:35.181][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-18 16:06:35.182][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-18 16:06:35.184][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-18 16:06:35.186][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-18 16:06:35.187][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-18 16:06:35.189][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-18 16:06:35.190][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-18 16:06:35.192][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-18 16:06:35.193][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-18 16:06:35.195][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-18 16:06:35.197][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-18 16:06:35.198][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-18 16:06:35.200][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-18 16:06:35.201][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-18 16:06:35.203][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-18 16:06:35.205][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-18 16:06:35.206][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-18 16:06:35.208][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-18 16:06:35.210][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-18 16:06:35.211][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-18 16:06:35.213][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-18 16:06:35.214][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-18 16:06:35.216][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-18 16:06:35.217][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-18 16:06:35.219][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-18 16:06:35.221][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-18 16:06:35.222][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-18 16:06:35.224][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-18 16:06:35.225][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-18 16:06:35.227][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-18 16:06:35.229][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-18 16:06:35.230][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-18 16:06:35.232][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-18 16:06:35.233][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-18 16:06:35.235][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-18 16:06:35.237][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-18 16:06:35.238][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-18 16:06:35.240][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-18 16:06:35.242][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-05-18 16:06:35.243][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:06:35.245][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.247][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:06:35.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:35.388][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-05-18 16:06:35.390][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:06:35.392][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.394][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-05-18 16:06:35.395][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.396][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:35.397][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.399][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:35.400][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.401][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:35.402][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-05-18 16:06:35.404][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:35.405][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.411][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-05-18 16:06:35.412][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:35.413][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-05-18 16:06:35.413][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-05-18 16:06:35.415][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:35.416][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:35.417][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:06:35.418][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:35.419][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:35.421][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:35.422][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:35.423][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:35.424][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:35.425][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:06:35.425][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-05-18 16:06:35.427][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:35.428][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:35.429][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.430][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:35.431][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-05-18 16:06:35.433][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.435][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-05-18 16:06:35.436][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.437][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:35.438][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.440][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:35.441][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.442][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:35.443][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:06:35.445][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:35.446][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.447][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-05-18 16:06:35.448][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:35.450][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-05-18 16:06:35.450][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-05-18 16:06:35.450][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-05-18 16:06:35.450][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-05-18 16:06:35.450][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-05-18 16:06:35.450][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-05-18 16:06:35.451][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:35.452][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:06:35.453][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:06:35.454][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:35.456][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:35.457][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:35.458][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:35.459][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:35.460][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:35.461][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:06:35.461][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:06:35.463][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:35.464][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:35.465][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.466][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:35.468][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-18 16:06:35.470][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:35.471][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-05-18 16:06:35.472][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.473][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:35.475][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.476][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:35.477][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.478][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:35.479][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:06:35.481][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:35.482][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.483][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-05-18 16:06:35.484][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:35.486][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:06:35.487][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:35.488][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:06:35.488][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:06:35.488][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:06:35.490][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:06:35.491][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:35.492][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:35.493][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:35.494][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:35.495][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:35.496][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:35.498][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:06:35.498][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:06:35.498][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:06:35.499][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:35.500][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:35.501][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.502][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:06:35.504][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-18 16:06:35.506][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.507][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-05-18 16:06:35.508][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.510][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:06:35.511][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.512][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:06:35.513][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.514][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:06:35.516][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:06:35.517][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:06:35.518][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.519][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-05-18 16:06:35.521][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:06:35.522][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-05-18 16:06:35.522][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:06:35.523][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:06:35.524][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:06:35.525][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:06:35.527][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:35.528][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:35.529][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:06:35.535][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:06:35.536][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:06:35.537][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:06:35.539][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:06:35.539][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:06:35.539][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:06:35.540][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:06:35.541][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:06:35.542][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:06:35.543][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:06:35.545][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-05-18 16:06:35.546][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:06:35.548][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:06:35.550][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-05-18 16:06:35.552][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:06:35.553][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-05-18 16:06:35.560][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-05-18 16:06:35.562][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-05-18 16:06:35.563][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-05-18 16:06:35.565][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-05-18 16:06:35.566][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:35.568][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:35.569][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-05-18 16:06:35.571][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:35.572][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:35.653][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-05-18 16:06:35.658][biodb::testThat]
biodb.INFO [2024-05-18 16:06:35.660][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-18 16:06:35.661][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:06:35.662][biodb::testThat]
biodb.TRACE[2024-05-18 16:06:35.675][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-05-18 16:06:35.676][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:35.679][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:06:35.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:35.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:35.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:35.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:35.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:35.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:35.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:35.707][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:35.708][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:35.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.711][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:35.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:35.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.718][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:35.719][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:35.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.724][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:35.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:35.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.729][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:35.730][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:35.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.732][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.735][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:35.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:35.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.740][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:35.741][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:35.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.743][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.745][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:35.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.750][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:35.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:35.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.754][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.756][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:35.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:35.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.761][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:35.763][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:35.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.765][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.768][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:35.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:35.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:35.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:35.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:35.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:35.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:35.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:35.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:35.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:35.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:35.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:35.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:35.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:35.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:35.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:35.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:35.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:35.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:35.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:35.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:35.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:35.867][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-05-18 16:06:35.870][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:35.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:35.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.875][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:35.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:35.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:35.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:35.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:35.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:35.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:35.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:35.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:35.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:35.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:35.902][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:06:36.085][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:06:36.087][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-05-18 16:06:36.088][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:06:36.102][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-05-18 16:06:36.104][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:36.105][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-05-18 16:06:36.115][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:36.117][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:36.118][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-05-18 16:06:36.120][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:36.121][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-05-18 16:06:36.122][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:36.123][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-18 16:06:36.135][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-05-18 16:06:36.136][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-05-18 16:06:36.138][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:06:36.142][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-05-18 16:06:36.143][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:06:36.145][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:06:36.146][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:06:36.147][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:06:36.149][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:06:36.150][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-18 16:06:36.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:36.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:36.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:36.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:36.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:36.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:36.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:36.167][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.DEBUG[2024-05-18 16:06:36.170][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:06:36.172][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:06:36.173][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.TRACE[2024-05-18 16:06:37.586][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1).
biodb.DEBUG[2024-05-18 16:06:39.013][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:06:39.017][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.content"
biodb.TRACE[2024-05-18 16:06:39.045][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.request"
biodb.TRACE[2024-05-18 16:06:39.051][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html"
biodb.DEBUG[2024-05-18 16:06:39.054][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:06:39.056][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:39.058][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:06:39.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:39.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:39.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:39.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:39.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:39.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:39.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:39.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.098][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:39.100][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.103][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.105][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:39.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:39.167][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-05-18 16:06:39.169][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.174][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.180][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:39.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:39.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.216][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:39.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:39.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.222][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:39.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:39.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:39.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:39.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.340][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.344][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.362][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:39.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:39.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.368][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:39.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:39.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.373][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:39.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:39.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.394][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:39.396][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:39.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.398][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.399][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:39.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.414][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:39.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:39.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.419][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:39.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:39.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.424][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:39.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.429][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:39.430][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:39.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.432][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.433][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:39.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:39.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.448][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.453][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.458][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.463][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.464][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.466][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.467][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.497][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.498][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.500][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:39.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.521][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:39.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.526][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:39.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:39.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.531][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:39.532][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:39.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.535][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.536][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.551][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:39.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:39.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:39.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:39.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.566][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:39.567][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:39.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.570][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.571][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.586][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:39.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.591][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.596][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.601][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:39.602][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.604][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.606][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:39.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.621][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.622][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.624][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.632][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:39.633][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:39.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.635][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.642][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.643][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.646][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.653][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:39.654][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:39.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.656][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.663][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:39.664][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:39.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.667][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.673][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:39.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:39.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.677][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.684][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.685][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.687][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.694][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.695][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.698][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.715][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-05-18 16:06:39.717][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:39.718][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:06:39.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:39.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:39.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:39.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:39.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:39.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:39.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:39.746][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.749][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.757][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:39.758][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:39.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.763][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:39.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:39.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.768][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:39.769][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:39.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.771][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.774][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:39.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:39.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.779][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:39.780][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:39.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.784][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:39.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:39.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.790][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:39.791][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:39.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.793][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.796][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:39.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:39.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.801][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.802][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.804][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.808][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:39.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:39.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:39.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:39.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:39.870][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-05-18 16:06:39.873][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:39.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:39.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:39.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:39.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:39.904][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:06:39.905][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-05-18 16:06:39.944][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:06:39.958][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-05-18 16:06:39.960][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:06:39.962][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:06:39.963][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:06:39.964][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:06:39.966][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:06:39.967][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-18 16:06:39.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:39.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:39.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:39.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:39.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:39.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:39.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:39.994][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-05-18 16:06:39.998][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:06:39.999][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:06:40.000][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-05-18 16:06:41.293][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-05-18 16:06:42.563][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:06:42.567][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-05-18 16:06:42.573][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-05-18 16:06:42.577][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-05-18 16:06:42.580][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:06:42.582][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:42.583][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:06:42.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:42.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:42.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:42.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:42.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:42.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:42.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:42.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.620][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:42.621][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:42.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.623][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.625][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:42.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:42.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:42.681][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-05-18 16:06:42.690][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:42.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:42.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.695][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:42.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:42.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:42.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:42.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.706][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:42.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:42.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.710][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:42.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:42.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:42.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:42.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:42.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:42.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:42.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:42.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:42.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.821][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.825][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:42.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.841][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:42.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:42.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.851][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:42.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:42.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.864][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:42.865][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:42.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.867][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.869][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:42.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:42.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.889][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:42.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:42.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:42.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.899][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:42.900][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:42.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.902][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.903][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:42.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:42.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.918][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:42.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:42.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.923][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.928][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:42.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:42.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.933][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:42.934][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:42.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.937][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.938][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:42.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:42.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.967][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.968][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.970][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:42.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:42.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:42.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.991][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:42.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:42.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:42.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:42.996][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:42.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:42.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.001][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:43.003][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:43.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.005][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.006][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:43.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:43.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.021][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:43.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:43.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:43.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.036][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:43.037][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.039][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.040][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:43.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.055][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:43.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.060][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.065][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.069][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:43.071][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.073][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.074][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:43.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.089][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.090][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.092][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.099][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:43.100][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:43.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.103][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.109][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.110][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.113][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.119][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:43.120][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:43.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.123][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.129][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:43.130][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:43.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.133][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.139][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:43.141][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.143][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.149][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.151][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.153][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.159][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.161][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.163][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.187][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-05-18 16:06:43.189][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:43.190][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:06:43.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:43.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:43.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:43.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:43.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:43.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:43.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:43.226][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.230][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.238][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:43.239][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:43.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.242][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.244][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:43.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:43.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.250][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:43.251][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:43.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.253][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.256][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:43.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:43.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.261][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:43.262][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:43.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.265][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.268][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:43.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:43.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.273][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:43.274][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.276][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.279][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:43.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.285][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.286][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.288][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.293][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:43.355][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-05-18 16:06:43.358][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.363][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:43.388][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:06:43.389][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-05-18 16:06:43.390][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:06:43.392][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-05-18 16:06:43.394][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:06:43.398][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-05-18 16:06:43.400][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:06:43.401][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:43.403][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:06:43.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:43.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:43.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:43.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:43.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:43.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:43.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:43.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.433][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:43.435][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.437][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.439][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:43.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:43.492][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-05-18 16:06:43.494][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.499][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.504][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.509][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:43.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:43.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:43.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:43.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.519][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:43.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:43.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.524][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:43.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:43.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:43.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.623][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.627][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.643][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:43.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:43.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.647][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:43.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.652][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:43.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:43.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.657][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:43.658][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:43.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.661][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.662][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:43.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:43.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.677][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:43.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:43.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.682][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:43.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:43.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.687][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:43.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:43.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.692][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:43.693][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:43.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.696][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.697][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:43.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:43.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.712][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.717][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.722][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.727][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.728][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.730][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.731][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.761][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.762][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.764][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.780][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:43.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.785][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:43.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:43.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.790][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:43.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:43.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.795][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:43.796][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:43.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.798][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.800][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:43.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.814][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:43.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.829][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:43.835][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.838][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.839][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:43.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.853][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:43.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.858][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.864][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.869][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:43.870][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.872][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.874][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:43.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.888][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.889][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:43.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.892][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.898][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:43.900][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:43.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.902][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.908][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:43.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:43.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.912][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.918][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:43.920][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:43.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.922][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.929][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:43.930][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:43.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.932][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.939][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:43.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:43.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.942][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.949][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.950][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:43.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.952][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.959][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.960][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:43.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:43.962][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:43.981][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-05-18 16:06:43.983][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:43.984][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:06:43.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:43.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:43.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:43.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:43.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:43.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:43.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:44.014][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:44.015][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:44.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.017][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.025][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:44.026][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:44.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.028][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.030][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:44.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:44.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.035][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:44.036][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:44.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.039][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.041][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:44.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.046][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:44.047][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:44.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.049][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.052][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:44.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:44.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.057][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:44.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:44.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.060][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.062][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:44.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:44.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.067][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:44.069][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:44.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.071][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.074][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:44.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:44.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:44.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:44.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:44.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:44.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:44.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:44.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:44.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:44.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:44.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:44.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:44.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:44.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:44.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:44.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:44.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:44.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:44.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:44.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:44.135][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-05-18 16:06:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:44.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:44.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.142][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:44.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:44.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:44.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:44.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:44.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:44.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:44.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:44.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:44.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:44.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:44.162][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:06:44.163][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-05-18 16:06:44.164][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:06:44.166][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-05-18 16:06:44.168][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:06:44.169][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:06:44.170][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:06:44.172][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:06:44.173][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:06:44.174][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-18 16:06:44.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:44.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:44.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:44.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:44.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:44.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:44.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:44.191][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-05-18 16:06:44.194][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:06:44.196][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:06:44.197][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-05-18 16:06:45.804][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-05-18 16:06:47.414][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:06:47.417][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-05-18 16:06:47.423][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-05-18 16:06:47.426][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-05-18 16:06:47.430][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:06:47.431][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:47.433][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:06:47.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:47.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:47.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:47.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:47.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:47.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:47.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:47.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.468][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:47.469][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.471][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.473][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:47.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:47.528][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-05-18 16:06:47.530][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.534][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.539][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.551][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:47.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:47.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.556][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:47.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:47.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.561][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:47.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:47.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.566][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:47.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:47.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:47.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:47.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:47.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:47.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:47.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:47.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:47.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.663][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.667][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.683][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:47.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:47.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.688][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:47.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:47.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.693][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:47.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:47.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.698][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:47.699][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:47.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.702][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.703][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:47.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.718][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:47.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:47.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.723][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:47.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:47.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.728][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:47.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.733][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:47.734][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:47.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.737][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.738][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:47.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:47.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.753][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:47.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:47.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.758][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:47.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:47.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.763][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:47.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:47.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.768][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:47.769][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:47.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.772][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.773][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:47.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:47.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.803][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.805][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.807][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.823][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:47.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.828][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:47.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:47.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.833][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:47.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:47.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.838][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:47.839][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:47.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.841][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.842][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:47.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:47.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.857][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:47.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:47.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:47.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:47.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:47.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:47.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.872][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:47.873][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:47.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.876][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.877][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:47.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:47.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.892][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:47.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.897][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.901][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.906][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:47.908][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.910][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.911][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:47.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.926][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.927][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:47.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.930][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.937][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:47.938][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:47.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.941][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.947][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:47.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:47.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.951][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.958][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:47.959][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:47.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.962][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.968][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:47.970][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:47.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.972][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.980][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:47.981][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:47.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.984][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:47.991][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.992][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:47.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:47.994][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.001][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:48.002][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:48.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.005][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.040][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-05-18 16:06:48.042][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:48.043][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:06:48.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:48.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:48.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:48.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:48.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:48.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:48.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:48.095][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:48.096][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:48.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.099][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:48.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:48.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.108][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:48.109][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:48.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.112][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.115][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:48.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:48.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.120][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:48.122][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:48.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.124][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:48.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:48.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.133][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:48.134][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:48.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.136][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.140][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:48.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:48.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.145][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:48.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:48.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.149][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.153][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:48.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.158][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:48.159][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:48.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.161][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.169][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:48.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:48.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:48.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:48.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:48.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:48.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:48.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:48.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:48.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:48.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:48.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:48.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:48.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:48.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:48.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:48.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:48.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:48.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:48.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:48.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:48.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:48.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:48.235][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-05-18 16:06:48.238][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:48.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:48.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.243][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:48.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:48.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:48.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:48.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:48.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:48.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:48.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:48.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:48.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:48.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:48.262][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:06:48.264][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-05-18 16:06:48.265][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:06:48.267][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-05-18 16:06:48.269][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:06:48.270][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:06:48.271][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:06:48.273][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:06:48.274][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:06:48.275][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-18 16:06:48.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:48.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:48.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:48.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:48.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:48.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:48.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:48.293][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-05-18 16:06:48.296][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:06:48.297][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:06:48.299][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-05-18 16:06:49.724][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-05-18 16:06:51.072][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:06:51.075][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-05-18 16:06:51.593][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-05-18 16:06:51.597][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-05-18 16:06:51.601][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:06:51.603][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:51.605][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:06:51.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:51.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:51.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:51.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:51.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:51.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:51.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:51.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.644][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:51.646][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:51.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.648][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.650][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:51.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:51.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:51.704][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-05-18 16:06:51.705][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:51.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:51.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.710][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:51.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:51.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.715][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:51.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:51.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:51.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:51.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.730][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:51.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:51.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:51.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:51.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:51.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:51.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:51.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:51.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:51.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.833][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.835][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.837][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:51.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.860][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:51.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.865][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:51.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:51.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:51.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.874][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:51.876][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:51.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.878][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.879][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:51.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:51.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.894][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:51.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:51.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.899][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:51.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:51.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.904][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:51.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:51.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.908][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:51.910][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:51.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.912][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:51.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:51.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.927][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:51.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:51.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.932][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:51.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.937][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:51.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:51.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.942][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:51.943][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:51.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.945][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.946][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:51.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.975][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.976][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.979][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:51.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:51.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:51.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:51.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.000][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:52.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:52.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.005][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:52.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:52.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.010][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:52.011][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:52.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.014][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.015][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:52.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:52.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.030][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:52.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:52.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:52.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:52.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:52.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.044][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:52.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:52.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.048][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.049][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:52.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.064][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:52.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.068][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:52.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:52.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.073][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:52.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:52.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.078][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:52.079][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:52.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.082][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.083][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:52.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:52.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.098][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:52.099][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:52.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.101][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.108][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:52.109][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:52.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.111][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.118][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:52.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:52.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.122][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.128][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:52.129][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:52.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.132][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.138][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:52.140][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:52.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.142][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.148][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:52.150][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:52.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.159][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:52.160][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:52.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.162][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.169][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:52.170][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:52.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.172][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.188][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-05-18 16:06:52.189][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:52.191][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:06:52.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:52.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:52.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:52.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:52.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:52.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:52.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:52.217][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:52.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:52.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.221][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:52.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:52.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.228][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:52.229][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:52.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.231][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.233][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:52.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:52.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.238][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:52.239][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:52.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.242][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.244][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:52.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:52.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.249][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:52.250][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:52.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.254][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:52.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:52.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.259][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:52.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:52.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.263][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.265][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:52.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:52.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.270][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:52.271][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:52.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.273][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.276][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:52.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:52.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:52.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:52.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:52.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:52.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:52.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:52.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:52.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:52.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:52.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:52.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:52.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:52.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:52.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:52.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:52.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:52.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:52.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:52.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:52.341][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-05-18 16:06:52.343][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:52.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:52.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.348][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:52.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:52.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:52.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:52.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:52.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:52.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:52.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:52.367][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:06:52.368][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-05-18 16:06:52.370][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:06:52.371][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-05-18 16:06:52.373][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:06:52.374][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:06:52.376][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:06:52.377][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:06:52.378][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:06:52.379][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-18 16:06:52.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:52.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:52.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:52.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:52.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:52.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:52.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:52.396][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-05-18 16:06:52.399][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:06:52.401][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:06:52.402][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-05-18 16:06:53.789][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-05-18 16:06:55.144][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:06:55.146][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-05-18 16:06:55.152][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-05-18 16:06:55.156][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-05-18 16:06:55.160][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:06:55.161][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:55.163][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:06:55.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:55.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:55.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:55.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:55.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:55.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:55.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:55.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.203][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:55.204][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.206][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.208][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:55.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:55.262][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-05-18 16:06:55.264][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.268][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.273][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.278][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:55.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:55.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.283][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:55.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:55.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:55.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:55.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.293][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:55.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:55.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.391][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.395][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.411][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:55.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:55.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.416][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:55.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:55.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.421][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:55.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:55.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.425][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:55.427][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:55.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.430][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:55.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:55.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.445][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:55.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.450][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:55.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:55.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.455][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:55.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:55.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.460][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:55.461][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:55.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.464][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.465][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:55.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:55.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.480][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.485][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.490][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.495][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.496][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.498][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.500][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.530][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.531][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.557][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:55.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:55.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.562][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:55.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.566][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:55.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:55.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.571][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:55.572][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:55.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.575][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.576][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:55.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:55.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.590][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:55.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:55.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:55.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:55.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:55.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:55.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.605][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:55.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:55.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.608][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.609][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:55.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:55.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.624][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:55.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.629][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.634][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.639][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:55.640][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.642][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.643][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:55.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.658][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.659][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.662][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.668][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:55.670][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:55.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.672][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.679][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.680][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.682][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.689][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:55.690][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:55.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.693][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.699][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:55.700][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:55.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.703][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.709][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:55.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:55.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.713][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.719][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.721][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.723][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.729][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.731][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.733][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.748][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-05-18 16:06:55.750][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:55.751][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:06:55.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:55.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:55.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:55.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:55.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:55.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:55.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:55.776][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.777][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.780][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.787][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:55.789][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:55.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.791][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.793][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:55.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:55.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.798][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:55.800][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:55.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.802][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.804][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:55.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:55.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.809][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:55.811][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:55.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.813][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.815][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:55.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:55.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.820][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:55.821][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:55.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.824][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.826][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:55.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:55.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.831][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.832][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.834][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.837][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:55.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:55.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:55.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:55.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:55.898][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-05-18 16:06:55.901][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.906][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:55.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:55.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:55.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:55.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:55.925][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-18 16:06:55.927][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-05-18 16:06:55.928][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:06:55.930][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-05-18 16:06:55.932][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:06:55.933][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:06:55.935][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:06:55.936][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:06:55.937][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:06:55.938][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-18 16:06:55.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:55.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:55.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:55.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:55.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:55.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:55.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:06:55.956][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-05-18 16:06:55.959][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:06:55.960][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:06:55.962][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-05-18 16:06:57.311][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-05-18 16:06:58.680][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:06:58.683][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-05-18 16:06:58.688][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-05-18 16:06:58.692][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2024-05-18 16:06:58.695][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:06:58.696][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:58.698][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-18 16:06:58.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:58.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:58.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:58.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:58.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:58.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:58.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:58.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.733][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:58.734][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:58.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.736][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.738][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:58.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:58.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:58.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:58.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:58.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:58.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:58.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:58.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:58.798][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2024-05-18 16:06:58.800][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:58.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:58.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.805][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:58.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:58.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.809][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:58.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:58.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.814][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:58.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:58.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.819][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:58.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:58.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.824][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:58.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:58.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.829][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:58.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:58.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:58.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:58.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:58.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:58.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:58.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:58.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:58.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:58.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.929][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.931][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.933][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:58.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:58.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.949][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:58.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:58.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.954][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:58.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:58.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.959][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:58.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:58.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.964][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:58.965][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:58.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.967][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.968][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:58.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:58.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.983][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:58.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:58.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.988][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:58.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:58.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.993][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:58.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:58.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:58.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:58.998][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:58.999][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:59.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.001][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.002][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:59.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:59.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.017][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.022][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.027][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.031][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.033][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.035][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.036][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.066][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.067][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.069][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.086][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.091][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.096][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.100][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.102][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.104][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.105][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:59.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:59.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:59.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:59.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:59.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.134][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:59.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:59.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.138][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:59.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:59.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.154][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:59.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:59.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.158][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:59.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:59.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.163][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:59.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:59.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.168][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:59.169][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:59.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.172][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.173][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-18 16:06:59.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:59.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.188][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:59.189][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:59.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.191][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.204][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:59.205][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:59.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.207][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.214][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.224][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.225][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.228][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.234][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:59.235][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:59.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.238][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.244][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:06:59.245][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:59.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.248][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.254][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.256][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.258][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.264][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.266][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.268][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.275][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2024-05-18 16:06:59.277][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:06:59.278][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:06:59.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:06:59.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:06:59.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:06:59.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:06:59.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:06:59.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:06:59.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:06:59.295][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.296][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.298][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.305][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.306][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.308][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.310][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.315][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:06:59.316][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:06:59.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.318][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.320][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:59.321][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:59.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.323][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.325][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:59.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:59.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.330][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:06:59.331][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:06:59.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.333][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.335][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.336][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:06:59.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.338][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:06:59.388][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2024-05-18 16:06:59.391][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:59.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:59.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.396][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:06:59.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:06:59.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:06:59.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.407][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:59.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:59.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.412][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:06:59.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:06:59.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.417][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:59.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:06:59.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.422][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:59.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:06:59.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:06:59.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.519][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.523][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.538][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:59.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:59.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.543][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:59.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:59.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.548][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:59.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:59.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.553][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:59.554][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:59.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.557][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.558][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:06:59.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:59.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.573][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.578][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.582][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.587][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.589][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.591][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.592][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.607][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:06:59.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:06:59.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.611][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.617][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:06:59.619][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:06:59.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.621][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:06:59.628][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:59.629][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:06:59.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:06:59.631][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:06:59.643][biodb::testThat]
biodb.INFO [2024-05-18 16:06:59.644][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-18 16:06:59.645][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:06:59.647][biodb::testThat]
biodb.DEBUG[2024-05-18 16:06:59.650][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-05-18 16:06:59.651][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-05-18 16:06:59.653][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.INFO [2024-05-18 16:06:59.654][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8" for "ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8".
biodb.TRACE[2024-05-18 16:06:59.656][cch$loadFileContent] file.exist = [8]: "FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:06:59.658][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:06:59.659][conn$getEntryContent] 0 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:06:59.660][conn$getEntryContent] 8 entry content(s) need to be fetched from NCBI Gene database "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:06:59.662][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:06:59.668][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:06:59.670][private$retrieveContents] Get entry content(s) for 8 id(s)...
biodb.DEBUG[2024-05-18 16:06:59.676][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml".
biodb.DEBUG[2024-05-18 16:06:59.679][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:06:59.680][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:06:59.681][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml".
biodb.TRACE[2024-05-18 16:06:59.762][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml does not exist.
biodb.TRACE[2024-05-18 16:06:59.764][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:06:59.765][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:06:59.766][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml).
biodb.TRACE[2024-05-18 16:07:01.746][private$doSaveContentToFile] Saving to cache [8]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml"
biodb.DEBUG[2024-05-18 16:07:02.066][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:02.068][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-05-18 16:07:02.070][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-05-18 16:07:02.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:02.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:02.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:02.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:02.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:02.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:02.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:02.099][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.103][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.111][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:02.112][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:02.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.115][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.117][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:02.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:02.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.122][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:02.124][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:02.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.126][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.129][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:02.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:02.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.134][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:02.136][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:02.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.138][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.141][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:02.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:02.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.146][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:02.148][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:02.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.150][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.153][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:02.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:02.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.158][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.159][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.162][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.168][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:02.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:02.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:02.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:02.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:02.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:02.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:02.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:02.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:02.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:02.247][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.251][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.258][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:02.259][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:02.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.262][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.264][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:02.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:02.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.270][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:02.271][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:02.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.273][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.276][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:02.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:02.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.281][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:02.282][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:02.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.284][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.287][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:02.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:02.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.292][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:02.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:02.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.295][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.298][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:02.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:02.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.303][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.304][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.307][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.310][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:02.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:02.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:02.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:02.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:02.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:02.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:02.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:02.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:02.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:02.395][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.397][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.399][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.408][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:02.409][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:02.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.411][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.415][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:02.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:02.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.420][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:02.421][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:02.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.424][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.427][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:02.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:02.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.432][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:02.433][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:02.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.435][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:02.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:02.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.444][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:02.445][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:02.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.447][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.451][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:02.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:02.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.456][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.457][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.460][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.465][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:02.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:02.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:02.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:02.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:02.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:02.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:02.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:02.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:02.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:02.543][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.547][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.555][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:02.556][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:02.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.558][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.561][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:02.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:02.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.566][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:02.567][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:02.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.570][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.572][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:02.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:02.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.578][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:02.579][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:02.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.581][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:02.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.589][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:02.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:02.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.593][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.596][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:02.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:02.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.601][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.602][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.604][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.609][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:02.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:02.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:02.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:02.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:02.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:02.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:02.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:02.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:02.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:02.870][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.883][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:02.884][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:02.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.887][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.891][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:02.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:02.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.896][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:02.897][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:02.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.899][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.904][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:02.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:02.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.908][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:02.910][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:02.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.912][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.916][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:02.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:02.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.921][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:02.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:02.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.925][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.929][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:02.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:02.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.934][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.935][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.937][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.945][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:02.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:02.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:02.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:02.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:02.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:02.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:02.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:02.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:02.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:02.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:02.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:03.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:03.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:03.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:03.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:03.017][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.021][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.028][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:03.029][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:03.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.031][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.033][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:03.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:03.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.038][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:03.040][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:03.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.042][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.044][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:03.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:03.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.050][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:03.051][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:03.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.053][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:03.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.060][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:03.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:03.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.063][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:03.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:03.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.070][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:03.071][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:03.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.074][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.077][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:03.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:03.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:03.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:03.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:03.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:03.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:03.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:03.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:03.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:03.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:03.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:03.144][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.148][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.154][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:03.156][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:03.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.158][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.160][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:03.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:03.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.165][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:03.166][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:03.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.168][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.170][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:03.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:03.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.175][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:03.176][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:03.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.180][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:03.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:03.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.185][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:03.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:03.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.189][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.191][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:03.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:03.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.195][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:03.197][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:03.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.199][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.202][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:03.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:03.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:03.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:03.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:03.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:03.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:03.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:03.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:03.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:03.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:03.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:03.262][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.263][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.266][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.272][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:03.273][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:03.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.275][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.277][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-18 16:07:03.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-18 16:07:03.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.282][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-18 16:07:03.283][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-18 16:07:03.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.285][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.287][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:03.288][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:03.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.290][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.292][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-18 16:07:03.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-18 16:07:03.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.297][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-18 16:07:03.298][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:03.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.300][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.302][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:03.303][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-18 16:07:03.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.305][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-18 16:07:03.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:03.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:03.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:03.458][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-05-18 16:07:03.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:03.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:03.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:03.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:07:03.630][biodb::testThat]
biodb.INFO [2024-05-18 16:07:03.632][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-18 16:07:03.633][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:03.634][biodb::testThat]
biodb.TRACE[2024-05-18 16:07:03.637][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:03.639][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:03.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.641][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:03.643][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-05-18 16:07:03.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:03.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:03.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:03.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:03.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:03.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:03.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:03.678][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-05-18 16:07:03.685][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-05-18 16:07:03.688][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:03.689][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:03.691][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1".
biodb.TRACE[2024-05-18 16:07:03.843][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1 does not exist.
biodb.TRACE[2024-05-18 16:07:03.845][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:03.846][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:03.848][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1).
biodb.DEBUG[2024-05-18 16:07:03.888][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:03.891][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content"
biodb.TRACE[2024-05-18 16:07:03.896][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.request"
biodb.DEBUG[2024-05-18 16:07:03.899][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-05-18 16:07:03.922][biodb::testThat]
biodb.INFO [2024-05-18 16:07:03.923][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-18 16:07:03.925][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:03.926][biodb::testThat]
biodb.TRACE[2024-05-18 16:07:03.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:03.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:03.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:03.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:03.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:03.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:03.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:03.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:03.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:03.987][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-05-18 16:07:03.991][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:03.993][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-05-18 16:07:03.995][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:04.207][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-05-18 16:07:04.232][biodb::testThat]
biodb.INFO [2024-05-18 16:07:04.233][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-18 16:07:04.234][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:04.235][biodb::testThat]
biodb.TRACE[2024-05-18 16:07:04.249][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.253][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:04.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:04.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:04.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:04.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:04.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:04.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:04.273][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-05-18 16:07:04.274][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.279][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.284][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.289][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:07:04.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:07:04.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.294][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:07:04.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:07:04.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.298][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:07:04.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:07:04.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.303][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:07:04.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:07:04.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.309][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.314][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:04.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.319][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:07:04.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:07:04.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.324][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:07:04.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:07:04.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.329][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:07:04.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:07:04.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:04.333][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:07:04.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:07:04.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:04.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:07:04.346][biodb::testThat]
biodb.INFO [2024-05-18 16:07:04.347][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-18 16:07:04.348][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:04.350][biodb::testThat]
biodb.INFO [2024-05-18 16:07:04.364][biodb::testThat]
biodb.INFO [2024-05-18 16:07:04.365][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-18 16:07:04.366][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:04.368][biodb::testThat]
biodb.INFO [2024-05-18 16:07:04.378][biodb::testThat]
biodb.INFO [2024-05-18 16:07:04.380][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-18 16:07:04.381][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:04.382][biodb::testThat]
biodb.DEBUG[2024-05-18 16:07:04.387][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-05-18 16:07:07.158][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-05-18 16:07:10.312][biodb::testThat]
biodb.INFO [2024-05-18 16:07:10.313][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-18 16:07:10.314][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:10.316][biodb::testThat]
biodb.INFO [2024-05-18 16:07:10.325][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-18 16:07:10.327][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-05-18 16:07:10.328][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-05-18 16:07:10.330][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-05-18 16:07:10.337][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-05-18 16:07:10.338][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-18 16:07:10.339][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.342][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.344][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-18 16:07:10.350][biodb::testContext]
biodb.INFO [2024-05-18 16:07:10.351][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:07:10.352][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-05-18 16:07:10.354][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:07:10.355][biodb::testContext]
biodb.INFO [2024-05-18 16:07:10.358][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-05-18 16:07:10.360][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-18 16:07:10.365][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:07:10.367][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-18 16:07:10.368][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-18 16:07:10.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.373][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-18 16:07:10.374][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-18 16:07:10.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.379][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-18 16:07:10.380][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-18 16:07:10.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.385][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-18 16:07:10.386][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-18 16:07:10.387][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-18 16:07:10.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.391][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-18 16:07:10.393][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-18 16:07:10.394][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-18 16:07:10.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.398][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-18 16:07:10.400][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-18 16:07:10.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.404][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-18 16:07:10.405][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-18 16:07:10.406][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-18 16:07:10.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.411][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-18 16:07:10.412][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-18 16:07:10.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.417][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-18 16:07:10.421][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-18 16:07:10.422][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-18 16:07:10.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.427][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:07:10.429][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-18 16:07:10.430][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-18 16:07:10.432][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-18 16:07:10.433][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-18 16:07:10.434][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-18 16:07:10.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.438][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-18 16:07:10.440][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-18 16:07:10.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.444][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-18 16:07:10.445][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-18 16:07:10.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.450][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-18 16:07:10.451][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-18 16:07:10.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.455][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-18 16:07:10.457][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-18 16:07:10.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.461][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-18 16:07:10.462][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-18 16:07:10.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.467][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:07:10.468][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-18 16:07:10.471][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-18 16:07:10.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.476][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-18 16:07:10.477][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-18 16:07:10.478][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-18 16:07:10.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.483][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-18 16:07:10.485][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:10.486][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-18 16:07:10.487][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.488][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:07:10.489][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.491][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:07:10.492][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:10.493][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:07:10.494][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:07:10.495][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:07:10.497][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.498][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-18 16:07:10.499][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:07:10.500][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.501][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.502][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:07:10.502][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:07:10.502][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:07:10.502][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:07:10.502][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:07:10.504][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:07:10.505][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:10.506][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:10.507][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:07:10.508][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:10.509][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:10.510][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:07:10.512][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.513][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:07:10.514][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:07:10.515][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:10.516][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.518][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-18 16:07:10.520][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:10.521][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:07:10.522][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.523][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:07:10.524][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.526][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:07:10.527][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:10.528][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:07:10.529][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:07:10.531][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:07:10.532][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.533][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-18 16:07:10.534][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:07:10.535][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.537][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.538][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:07:10.538][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:07:10.538][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:07:10.538][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:07:10.538][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:07:10.539][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:07:10.540][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:10.548][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:10.549][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:07:10.551][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:10.552][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:10.553][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:07:10.554][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.555][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:07:10.556][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:07:10.557][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:10.558][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.560][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-18 16:07:10.562][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.563][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-18 16:07:10.564][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.565][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:07:10.566][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.568][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:07:10.569][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:10.570][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:07:10.571][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:07:10.572][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:07:10.573][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:10.575][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-18 16:07:10.576][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:07:10.577][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.578][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.579][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.580][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:07:10.582][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:10.583][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:10.584][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:07:10.585][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:10.586][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:10.587][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:07:10.588][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.589][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:07:10.591][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:07:10.592][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:10.593][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.594][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-18 16:07:10.596][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.597][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:07:10.598][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.600][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:07:10.601][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.602][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:07:10.603][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:10.604][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:07:10.605][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:07:10.607][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:07:10.608][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:10.609][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-18 16:07:10.610][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:07:10.611][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.612][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:10.614][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.615][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:07:10.616][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:10.617][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:10.618][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:07:10.619][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:10.620][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:10.621][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:07:10.623][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.624][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:07:10.625][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:07:10.626][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:10.627][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:10.629][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:07:10.630][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.724][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-18 16:07:10.725][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-18 16:07:10.727][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-18 16:07:10.728][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-18 16:07:10.730][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-18 16:07:10.731][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-18 16:07:10.733][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-18 16:07:10.735][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-18 16:07:10.736][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-18 16:07:10.738][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-18 16:07:10.739][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-18 16:07:10.741][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-18 16:07:10.742][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-18 16:07:10.744][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-18 16:07:10.745][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:07:10.747][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:07:10.748][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-18 16:07:10.750][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-18 16:07:10.751][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-18 16:07:10.753][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-18 16:07:10.754][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-18 16:07:10.756][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-18 16:07:10.757][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-18 16:07:10.759][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-18 16:07:10.760][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-18 16:07:10.762][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-18 16:07:10.763][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-18 16:07:10.765][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-18 16:07:10.766][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-18 16:07:10.768][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-18 16:07:10.770][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-18 16:07:10.771][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-18 16:07:10.773][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-18 16:07:10.774][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-18 16:07:10.776][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-18 16:07:10.777][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-18 16:07:10.779][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-18 16:07:10.780][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-18 16:07:10.782][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-18 16:07:10.783][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-18 16:07:10.785][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-18 16:07:10.786][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-18 16:07:10.788][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-18 16:07:10.789][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-18 16:07:10.791][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-18 16:07:10.793][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:07:10.794][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-18 16:07:10.796][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-18 16:07:10.797][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-18 16:07:10.799][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-18 16:07:10.800][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-18 16:07:10.802][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-18 16:07:10.803][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-18 16:07:10.805][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-18 16:07:10.806][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-18 16:07:10.808][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-18 16:07:10.809][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-18 16:07:10.811][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-18 16:07:10.812][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-18 16:07:10.814][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-18 16:07:10.815][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-18 16:07:10.817][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-18 16:07:10.818][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-18 16:07:10.820][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-18 16:07:10.821][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-18 16:07:10.823][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-18 16:07:10.824][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-18 16:07:10.826][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-18 16:07:10.828][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-18 16:07:10.829][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-18 16:07:10.831][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-18 16:07:10.832][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-18 16:07:10.834][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-18 16:07:10.835][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-18 16:07:10.837][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-18 16:07:10.838][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-18 16:07:10.840][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-18 16:07:10.841][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-18 16:07:10.843][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-18 16:07:10.845][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-18 16:07:10.846][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-18 16:07:10.848][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-18 16:07:10.849][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-18 16:07:10.851][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-18 16:07:10.853][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-05-18 16:07:10.854][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:07:10.855][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.858][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:07:10.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:10.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:10.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:10.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:10.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:10.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:10.997][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-05-18 16:07:10.999][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:07:11.001][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.002][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-05-18 16:07:11.003][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.005][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:07:11.006][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.012][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:07:11.013][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.014][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:07:11.015][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-05-18 16:07:11.017][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:07:11.018][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.019][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-05-18 16:07:11.020][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:07:11.021][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-05-18 16:07:11.021][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-05-18 16:07:11.023][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:11.024][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:11.025][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:07:11.026][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:11.027][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:11.028][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:07:11.030][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:11.031][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:11.032][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:07:11.033][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:07:11.033][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-05-18 16:07:11.034][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:07:11.035][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:07:11.036][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.038][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:11.039][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-05-18 16:07:11.041][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.042][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-05-18 16:07:11.044][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.045][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:07:11.046][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.047][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:07:11.049][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.050][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:07:11.051][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:07:11.052][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:07:11.053][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.055][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-05-18 16:07:11.056][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:07:11.057][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-05-18 16:07:11.057][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-05-18 16:07:11.057][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-05-18 16:07:11.057][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-05-18 16:07:11.057][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-05-18 16:07:11.057][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-05-18 16:07:11.058][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:11.059][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:07:11.061][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:07:11.062][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:11.063][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:11.064][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:07:11.065][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:11.066][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:11.068][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:07:11.069][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:11.069][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:07:11.070][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:07:11.071][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:07:11.072][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.074][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:11.075][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-18 16:07:11.077][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:11.078][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-05-18 16:07:11.079][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.081][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:07:11.082][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.083][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:07:11.084][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.085][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:07:11.087][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:07:11.088][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:07:11.089][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.090][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-05-18 16:07:11.091][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:07:11.093][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:07:11.094][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:11.095][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:07:11.095][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:07:11.095][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:07:11.096][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:07:11.098][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:11.099][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:11.100][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:07:11.101][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:11.102][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:11.103][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:07:11.104][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:11.104][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:07:11.104][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:07:11.106][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:07:11.107][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:07:11.108][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.109][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:07:11.110][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-18 16:07:11.112][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.114][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-05-18 16:07:11.115][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.116][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:07:11.117][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.118][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:07:11.120][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.121][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:07:11.122][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:07:11.123][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:07:11.124][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.126][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-05-18 16:07:11.127][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:07:11.128][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-05-18 16:07:11.128][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:07:11.129][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:07:11.130][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:07:11.132][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:07:11.133][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:11.134][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:11.135][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:07:11.136][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:07:11.137][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:07:11.138][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:07:11.140][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:11.140][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:07:11.140][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:07:11.141][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:07:11.142][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:07:11.143][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:07:11.144][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:07:11.146][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-05-18 16:07:11.147][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:07:11.149][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:07:11.151][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-05-18 16:07:11.152][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:07:11.154][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-05-18 16:07:11.161][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-18 16:07:11.162][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-05-18 16:07:11.163][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-18 16:07:11.165][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-05-18 16:07:11.167][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:07:11.168][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:07:11.170][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-05-18 16:07:11.171][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:07:11.172][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:07:11.174][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:07:11.179][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-05-18 16:07:11.184][biodb::testThat]
biodb.INFO [2024-05-18 16:07:11.186][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-18 16:07:11.187][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:11.188][biodb::testThat]
biodb.TRACE[2024-05-18 16:07:11.192][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-05-18 16:07:11.193][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:07:11.196][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:11.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:11.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:11.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:11.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:11.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:11.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:11.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:11.215][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.218][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.225][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.226][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.229][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.235][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.236][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.239][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.245][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.246][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.249][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.255][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:11.256][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:11.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.259][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:11.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:11.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.265][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.266][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.269][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.275][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:11.277][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:11.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.279][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.280][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:11.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:11.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.285][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:11.287][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:11.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.289][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:11.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:11.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:11.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:11.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.299][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:11.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:11.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:11.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:11.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.309][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:11.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:11.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.316][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:11.317][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:11.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.320][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.321][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:11.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:11.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.326][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:11.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:11.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.330][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:11.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:11.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.336][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.338][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.340][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.347][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.348][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.350][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.357][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:11.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.372][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:11.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.393][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:11.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.407][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:11.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:11.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:11.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:11.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:11.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:11.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.422][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:11.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:11.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:11.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:11.489][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-05-18 16:07:11.492][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:11.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:11.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.497][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:11.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:11.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:11.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:11.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.507][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:07:11.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:07:11.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.512][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:07:11.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:07:11.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.516][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:07:11.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:07:11.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.521][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:07:11.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:07:11.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:11.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.618][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.620][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.622][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:11.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:11.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.638][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:11.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:11.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:11.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:11.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:11.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:11.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.653][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:11.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:11.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.656][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:11.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:11.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:11.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:11.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:11.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:11.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:11.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:11.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.687][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:11.688][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:11.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.690][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:11.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:11.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:11.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:11.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:11.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:11.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:11.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:11.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.721][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:11.722][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:11.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.725][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:11.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.741][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:11.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:11.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.746][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:11.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:11.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.751][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:11.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:11.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.756][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:11.757][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:11.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.761][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:11.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:11.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.791][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.793][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.795][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:11.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.833][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.834][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.836][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:11.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.867][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.868][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.871][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:11.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.903][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.905][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.907][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:11.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.938][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.939][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.941][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:11.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.972][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.973][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.975][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:11.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:11.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:11.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:11.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:11.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:11.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:11.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.006][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.007][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.010][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:12.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:12.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:12.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:12.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:12.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:12.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.040][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:12.042][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:12.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.044][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:12.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:12.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.075][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.078][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:12.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:12.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:12.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:12.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:12.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:12.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.109][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:12.110][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:12.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.113][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:12.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:12.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.129][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.133][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.139][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:12.141][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:12.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.143][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.150][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:12.151][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:12.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.153][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.160][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:12.161][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:12.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.164][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.170][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.172][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.174][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.181][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:12.182][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:12.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.185][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.191][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:12.193][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:12.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.195][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.201][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:12.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:12.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.205][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.215][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.222][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:12.223][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:12.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.226][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.232][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.233][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.236][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.244][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.247][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.254][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:12.255][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:12.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.258][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.265][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.266][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.269][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.276][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.277][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.280][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.293][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-05-18 16:07:12.305][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:07:12.306][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:12.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:12.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:12.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:12.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:12.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:12.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:12.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:12.323][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.325][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.327][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.333][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:12.335][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:12.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.337][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:12.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:12.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.344][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:12.345][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:12.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.347][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:12.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:12.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.354][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:12.355][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:12.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.357][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:12.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:12.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.364][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.365][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.367][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.375][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:12.377][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:12.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.379][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:12.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:12.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.386][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:12.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.389][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.391][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:12.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.396][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:12.397][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:12.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.399][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:12.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.406][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:12.407][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:12.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.409][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:12.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:12.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.416][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.417][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.419][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.426][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:12.427][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:12.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.431][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:12.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:12.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.436][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:12.437][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.439][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:12.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.446][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.447][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.449][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.456][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.457][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.459][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.466][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:12.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:12.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:12.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:12.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:12.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:12.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.480][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:12.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:12.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:12.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:12.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:12.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:12.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.495][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:12.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:12.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:12.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:12.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:12.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.509][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:12.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:12.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.524][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:12.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:12.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:12.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:12.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:12.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:12.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:12.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:12.591][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-05-18 16:07:12.594][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:12.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:12.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.599][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:12.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:12.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:12.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:12.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.628][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:07:12.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:07:12.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.633][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:07:12.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:07:12.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:07:12.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:07:12.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.643][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:07:12.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:07:12.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:12.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.764][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.767][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:12.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:12.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.798][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.799][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.801][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:12.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.832][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.833][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.836][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:12.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:12.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:12.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:12.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:12.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:12.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:12.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.867][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:12.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:12.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.870][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:12.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:12.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.887][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:12.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:12.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.892][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:12.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:12.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.897][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:12.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:12.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.902][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:12.903][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:12.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.906][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.907][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:12.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:12.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.937][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.938][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.941][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:12.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.971][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.973][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.975][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:12.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:12.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:12.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:12.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:13.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:13.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.006][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:13.007][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:13.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.010][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:13.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:13.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:13.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:13.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:13.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:13.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:13.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:13.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:13.042][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:13.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.044][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:13.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:13.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.076][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.077][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.079][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.110][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.112][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.114][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.146][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.148][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.150][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.187][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.188][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.191][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.222][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.223][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.225][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:13.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:13.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:13.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:13.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:13.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:13.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.256][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:13.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:13.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.259][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:13.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:13.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.275][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:13.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:13.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.279][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.286][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.287][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.291][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.297][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.299][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.301][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.308][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.309][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.312][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.318][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.320][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.322][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.329][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.330][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.333][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.339][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:13.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:13.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.343][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.350][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:13.351][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:13.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.354][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.360][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:13.362][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:13.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.364][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.371][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:13.372][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:13.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.374][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.381][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:13.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:13.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.384][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:13.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:13.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.395][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.401][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:13.403][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:13.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.405][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.412][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:13.413][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:13.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.416][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.422][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:13.424][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:13.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.426][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:07:13.438][biodb::testThat]
biodb.INFO [2024-05-18 16:07:13.439][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-18 16:07:13.440][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:13.442][biodb::testThat]
biodb.DEBUG[2024-05-18 16:07:13.444][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-05-18 16:07:13.446][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-18 16:07:13.450][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.INFO [2024-05-18 16:07:13.451][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75" for "ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75".
biodb.TRACE[2024-05-18 16:07:13.453][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-05-18 16:07:13.454][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:13.456][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:13.457][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:13.458][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:13.459][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:13.461][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-05-18 16:07:13.463][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2,65124/XML".
biodb.DEBUG[2024-05-18 16:07:13.465][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:13.467][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:13.468][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2,65124/XML".
biodb.TRACE[2024-05-18 16:07:13.584][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2,65124/XML).
biodb.TRACE[2024-05-18 16:07:13.692][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml"
biodb.DEBUG[2024-05-18 16:07:13.696][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:13.698][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-05-18 16:07:13.700][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:13.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:13.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:13.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:13.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:13.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:13.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:13.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:13.718][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:13.719][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:13.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:13.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:13.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.728][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.730][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.732][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.739][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.740][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.743][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.750][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.751][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.754][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.761][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.764][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.767][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.773][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.774][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.777][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.783][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:13.785][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:13.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.787][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.789][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:13.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:13.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.794][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:13.795][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:13.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.797][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:13.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:13.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.804][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:13.805][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:13.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.807][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:13.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:13.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:13.815][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:13.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.818][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:13.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:13.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.824][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:13.825][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:13.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.828][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.829][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:13.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:13.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.834][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:13.835][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:13.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.838][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:13.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:13.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.851][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:13.852][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:13.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.855][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:13.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:13.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.861][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:13.862][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:13.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.865][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:13.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:13.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.871][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:13.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:13.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.885][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:13.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:13.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.900][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:13.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:13.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.915][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:13.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:13.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.929][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:13.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:13.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:13.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:13.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:13.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:13.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:13.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:13.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:13.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:13.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:13.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:13.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:13.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:13.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:13.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:13.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:13.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:13.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:13.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:13.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:13.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:13.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:13.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:13.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:13.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:13.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:13.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:13.997][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:13.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:14.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.001][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:14.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:14.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.008][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:14.009][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:14.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.012][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:14.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:14.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.018][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:14.020][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:14.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.022][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:14.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:14.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.028][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:14.030][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:14.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.032][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:14.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:14.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.038][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:14.040][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:14.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.042][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:14.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:14.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.048][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:14.049][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:14.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.052][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:14.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:14.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.058][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:14.059][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:14.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.062][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.063][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:14.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:14.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.068][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:14.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:14.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.072][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:14.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:14.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:14.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:14.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.082][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:14.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:14.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.088][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:14.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:14.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.092][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:14.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.098][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:14.099][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:14.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.102][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.103][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:14.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:14.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.108][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:14.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:14.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.112][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:14.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:14.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.118][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:14.119][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:14.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.122][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:14.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:14.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.128][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:14.129][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:14.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.132][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:14.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:14.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.138][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:14.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:14.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:14.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:14.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:14.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:14.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.153][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:14.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:14.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:14.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:14.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:14.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:14.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.167][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:14.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:14.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:14.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:14.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:14.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:14.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.182][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:14.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:14.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:14.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:14.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:14.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:14.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.196][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:14.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:14.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:14.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:14.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:14.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:14.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:14.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:14.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:14.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:14.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:14.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:14.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:14.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:14.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:14.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:14.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:14.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:14.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:14.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:14.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:14.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:14.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:14.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:14.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:14.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:14.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:14.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:14.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:14.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:14.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:14.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:14.284][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-05-18 16:07:14.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:14.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:14.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:14.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:14.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:14.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:14.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:14.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:07:14.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:14.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:07:14.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:14.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:07:14.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:07:14.331][biodb::testThat]
biodb.INFO [2024-05-18 16:07:14.332][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-18 16:07:14.333][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:14.335][biodb::testThat]
biodb.TRACE[2024-05-18 16:07:14.338][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:14.339][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:14.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.342][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:14.343][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-05-18 16:07:14.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:14.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:14.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.366][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:14.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:14.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:14.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:14.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:14.378][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-05-18 16:07:14.385][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-05-18 16:07:14.388][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:14.389][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:14.391][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10".
biodb.TRACE[2024-05-18 16:07:14.441][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10 does not exist.
biodb.TRACE[2024-05-18 16:07:14.443][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:14.445][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:14.446][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10).
biodb.DEBUG[2024-05-18 16:07:14.499][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:14.502][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content"
biodb.TRACE[2024-05-18 16:07:14.577][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.request"
biodb.DEBUG[2024-05-18 16:07:14.580][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-05-18 16:07:14.598][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:14.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:14.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.602][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.604][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:14.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:14.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.607][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:07:14.614][biodb::testThat]
biodb.INFO [2024-05-18 16:07:14.615][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-18 16:07:14.616][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:14.617][biodb::testThat]
biodb.TRACE[2024-05-18 16:07:14.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:14.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:14.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:14.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:14.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:14.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:14.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:14.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:14.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:14.676][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-05-18 16:07:14.680][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:14.681][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-05-18 16:07:14.683][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:15.832][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-05-18 16:07:15.858][biodb::testThat]
biodb.INFO [2024-05-18 16:07:15.859][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-18 16:07:15.861][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:15.862][biodb::testThat]
biodb.TRACE[2024-05-18 16:07:15.875][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:15.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:15.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:15.881][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:15.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:15.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:15.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:15.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:15.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:15.890][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:07:15.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:07:15.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:15.895][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:07:15.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:07:15.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:15.900][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:07:15.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:07:15.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:15.905][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:07:15.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:07:15.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:15.912][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:15.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:15.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:15.916][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:07:15.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:07:15.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:15.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:15.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:07:15.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:15.926][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:07:15.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:07:15.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:15.931][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:07:15.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:07:15.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:15.936][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:07:15.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:07:15.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:15.942][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:07:15.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:07:15.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:15.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:07:15.959][biodb::testThat]
biodb.INFO [2024-05-18 16:07:15.961][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-18 16:07:15.962][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:15.963][biodb::testThat]
biodb.INFO [2024-05-18 16:07:15.976][biodb::testThat]
biodb.INFO [2024-05-18 16:07:15.977][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-18 16:07:15.978][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:15.980][biodb::testThat]
biodb.INFO [2024-05-18 16:07:15.993][biodb::testThat]
biodb.INFO [2024-05-18 16:07:15.994][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-18 16:07:15.995][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:15.998][biodb::testThat]
biodb.DEBUG[2024-05-18 16:07:16.003][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-05-18 16:07:16.092][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-05-18 16:07:16.204][biodb::testThat]
biodb.INFO [2024-05-18 16:07:16.206][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-18 16:07:16.207][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:16.208][biodb::testThat]
biodb.DEBUG[2024-05-18 16:07:16.279][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-05-18 16:07:16.342][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:16.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:16.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:16.346][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:16.347][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:16.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:16.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:16.351][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:07:16.353][biodb::testThat]
biodb.INFO [2024-05-18 16:07:16.360][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-05-18 16:07:16.364][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:16.365][biodb::testThat]
biodb.TRACE[2024-05-18 16:07:16.381][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:16.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:16.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:16.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:16.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:16.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:16.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:16.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:16.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:16.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:16.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:16.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:16.487][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-05-18 16:07:16.491][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:16.493][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-05-18 16:07:16.494][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:16.496][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-05-18 16:07:16.565][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-05-18 16:07:16.569][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:16.571][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-05-18 16:07:16.572][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:16.574][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-05-18 16:07:16.594][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:07:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:07:16.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:16.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:16.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:16.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:16.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:16.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:16.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:16.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:16.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:16.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:16.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:16.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:16.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:16.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:16.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:16.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:16.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:16.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:16.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:16.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:16.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:16.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:16.640][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:16.644][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:16.645][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:16.647][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:16.696][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:16.698][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:16.699][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:16.701][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:16.749][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:16.751][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content"
biodb.TRACE[2024-05-18 16:07:17.295][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.request"
biodb.DEBUG[2024-05-18 16:07:17.316][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-05-18 16:07:17.320][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:17.322][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:17.323][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000".
biodb.TRACE[2024-05-18 16:07:17.374][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-18 16:07:17.375][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:17.377][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:17.379][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000).
biodb.DEBUG[2024-05-18 16:07:17.604][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:17.607][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content"
biodb.TRACE[2024-05-18 16:07:17.615][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.request"
biodb.DEBUG[2024-05-18 16:07:17.928][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-05-18 16:07:17.932][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:17.934][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:17.936][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000".
biodb.TRACE[2024-05-18 16:07:18.002][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-18 16:07:18.003][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:18.005][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:18.007][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000).
biodb.DEBUG[2024-05-18 16:07:18.119][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:18.122][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content"
biodb.TRACE[2024-05-18 16:07:18.127][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.request"
biodb.DEBUG[2024-05-18 16:07:18.158][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-05-18 16:07:18.162][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:18.163][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:18.165][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000".
biodb.TRACE[2024-05-18 16:07:18.214][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-18 16:07:18.216][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:18.217][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:18.219][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000).
biodb.DEBUG[2024-05-18 16:07:18.341][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:18.344][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content"
biodb.TRACE[2024-05-18 16:07:18.350][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.request"
biodb.TRACE[2024-05-18 16:07:18.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:18.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:18.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:18.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:18.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:18.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:18.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:18.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:18.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:18.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:18.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:18.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:18.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:18.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:18.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:18.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:18.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:18.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:18.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:18.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:18.407][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:18.410][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:18.411][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:18.414][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:18.468][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:18.469][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:18.471][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:18.472][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:18.515][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:18.518][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content"
biodb.TRACE[2024-05-18 16:07:18.523][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.request"
biodb.DEBUG[2024-05-18 16:07:18.544][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-05-18 16:07:18.547][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:18.549][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:18.551][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2024-05-18 16:07:18.603][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-18 16:07:18.604][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:18.606][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:18.608][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.INFO [2024-05-18 16:07:18.646][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000". Retrying connection to server...
biodb.DEBUG[2024-05-18 16:07:18.648][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:18.649][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:18.651][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2024-05-18 16:07:18.707][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-18 16:07:18.708][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:18.710][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:18.712][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.INFO [2024-05-18 16:07:18.755][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000". Retrying connection to server...
biodb.DEBUG[2024-05-18 16:07:18.756][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:18.758][private$doSendRequestLoop] Request body is "".
biodb.DEBUG[2024-05-18 16:07:18.759][rule$waitAsNeeded] Wait 0.17585 second(s).
biodb.TRACE[2024-05-18 16:07:18.947][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2024-05-18 16:07:19.001][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-18 16:07:19.003][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:19.005][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:19.006][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.DEBUG[2024-05-18 16:07:19.222][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:19.225][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content"
biodb.TRACE[2024-05-18 16:07:19.232][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.request"
biodb.DEBUG[2024-05-18 16:07:19.405][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-05-18 16:07:19.409][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:19.411][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:19.413][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2024-05-18 16:07:19.475][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-18 16:07:19.477][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:19.480][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:19.483][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.DEBUG[2024-05-18 16:07:19.587][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:19.590][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content"
biodb.TRACE[2024-05-18 16:07:19.596][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.request"
biodb.DEBUG[2024-05-18 16:07:19.635][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-05-18 16:07:19.639][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:19.640][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:19.642][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2024-05-18 16:07:19.707][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-18 16:07:19.708][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:19.710][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:19.712][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000).
biodb.DEBUG[2024-05-18 16:07:20.075][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:20.078][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content"
biodb.TRACE[2024-05-18 16:07:20.437][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.request"
biodb.TRACE[2024-05-18 16:07:20.464][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:20.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:20.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:07:20.483][biodb::testThat]
biodb.INFO [2024-05-18 16:07:20.484][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-05-18 16:07:20.485][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:20.486][biodb::testThat]
biodb.TRACE[2024-05-18 16:07:20.490][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:07:20.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:07:20.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.507][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:07:20.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:07:20.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:20.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:20.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:20.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:20.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:20.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:20.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:20.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:20.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:20.574][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:20.578][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:20.580][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-18 16:07:20.582][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:20.586][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-18 16:07:20.589][private$loadEntries] Creating entries from ids [3]: "171380427, 171378033, 171375796".
biodb.DEBUG[2024-05-18 16:07:20.591][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:07:20.593][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171380427, 171378033, 171375796".
biodb.TRACE[2024-05-18 16:07:20.595][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:07:20.597][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:20.598][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:20.599][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:20.600][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:20.602][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:20.616][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:07:20.620][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380427,171378033,171375796/XML".
biodb.DEBUG[2024-05-18 16:07:20.625][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:20.627][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:20.629][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380427,171378033,171375796/XML".
biodb.TRACE[2024-05-18 16:07:20.782][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380427,171378033,171375796/XML).
biodb.TRACE[2024-05-18 16:07:20.928][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380427.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171378033.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171375796.xml"
biodb.DEBUG[2024-05-18 16:07:20.934][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:20.936][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:07:20.938][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:20.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:20.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:20.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:20.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:20.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:20.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:20.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:20.957][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:20.958][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:20.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.961][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:20.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:20.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.967][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:20.969][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:20.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.971][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:20.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:20.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.978][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:20.980][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:20.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.983][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:20.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:20.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:20.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:20.995][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:20.996][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:20.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.000][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.007][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.008][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.011][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.018][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.019][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.021][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.029][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:21.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:21.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.035][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:21.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:21.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.040][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:21.042][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:21.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.044][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:21.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:21.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:21.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:21.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.054][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:21.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:21.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.064][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:21.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:21.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.068][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:21.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:21.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.077][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:21.078][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:21.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.082][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:21.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:21.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.088][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:21.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:21.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.091][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:21.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:21.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.098][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:21.100][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:21.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.102][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:21.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:21.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.109][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:21.110][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:21.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.113][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:21.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:21.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.119][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:21.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.135][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:21.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.150][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:21.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.165][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:21.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.180][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:21.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:21.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:21.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:21.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:21.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:21.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:21.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:21.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:21.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:21.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:21.266][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.270][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.277][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.278][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.280][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.287][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.288][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.291][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.300][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.301][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.304][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.311][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.313][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.315][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.322][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.323][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.326][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.336][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:21.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:21.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.339][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.341][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:21.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:21.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.346][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:21.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:21.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.350][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:21.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:21.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:21.358][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:21.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.360][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:21.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:21.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:21.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:21.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.371][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:21.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:21.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.378][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:21.379][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:21.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.381][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.383][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:21.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:21.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.388][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:21.389][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:21.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.391][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:21.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:21.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.398][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:21.399][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:21.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.401][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:21.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:21.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.408][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:21.409][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:21.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.411][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:21.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:21.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.418][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:21.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.432][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:21.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.447][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:21.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.461][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:21.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.476][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:21.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:21.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:21.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:21.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:21.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:21.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:21.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:21.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:21.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:21.545][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.549][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.555][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.557][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.559][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.566][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.567][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.569][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.576][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.577][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.580][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.587][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.588][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.590][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.597][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.598][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.600][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.607][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:21.608][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:21.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.611][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.612][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:21.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:21.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.617][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:21.618][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:21.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.621][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:21.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:21.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:21.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:21.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.631][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:21.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:21.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.638][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:21.639][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:21.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.642][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:21.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:21.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.648][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:21.649][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:21.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.652][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.653][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:21.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:21.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.658][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:21.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:21.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.662][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:21.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:21.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.675][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:21.677][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:21.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.679][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:21.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:21.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.686][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:21.687][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:21.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.689][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:21.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:21.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.696][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:21.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:21.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.711][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:21.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:21.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.725][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:21.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:21.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.740][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:21.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:21.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.754][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:21.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:21.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:21.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:21.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:21.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:21.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:21.851][self$createEntryFromContent] Accession numbers: 171380427, 171378033, 171375796.
biodb.DEBUG[2024-05-18 16:07:21.853][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:21.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:21.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:21.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:21.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:21.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:21.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:21.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:21.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.878][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:21.880][private$selectFields]
biodb.TRACE[2024-05-18 16:07:21.881][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:21.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:21.883][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:21.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.886][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.889][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.891][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.895][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.896][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:21.897][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:21.898][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.902][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.903][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:21.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.927][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:07:21.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:21.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:21.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:21.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:21.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:21.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:21.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:21.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.952][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:21.953][private$selectFields]
biodb.TRACE[2024-05-18 16:07:21.954][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:21.955][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:21.956][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:21.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.961][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.963][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.964][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.966][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.967][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:21.969][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:21.970][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.971][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.973][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.975][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:21.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:21.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:21.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:21.991][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:07:21.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:21.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:21.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:22.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:22.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:22.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:22.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:22.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.016][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:22.017][private$selectFields]
biodb.TRACE[2024-05-18 16:07:22.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:22.019][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:22.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:22.022][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.023][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.025][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.030][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.031][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:22.033][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:22.034][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.037][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.039][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:22.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171375796].
biodb.DEBUG[2024-05-18 16:07:22.056][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:22.058][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:22.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:22.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:22.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:22.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:22.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:22.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:22.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:22.088][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:22.092][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:22.094][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:22.096][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:22.156][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:22.158][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:22.160][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:22.161][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:22.243][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:22.246][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-05-18 16:07:22.251][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-05-18 16:07:22.255][private$loadEntries] Creating entries from ids [3]: "171368245, 171367693, 171367665".
biodb.DEBUG[2024-05-18 16:07:22.256][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:07:22.258][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171368245, 171367693, 171367665".
biodb.TRACE[2024-05-18 16:07:22.260][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:07:22.262][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:22.263][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:22.264][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:22.266][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:22.267][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:22.268][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:07:22.270][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171368245,171367693,171367665/XML".
biodb.DEBUG[2024-05-18 16:07:22.273][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:22.274][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:22.276][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171368245,171367693,171367665/XML".
biodb.TRACE[2024-05-18 16:07:22.432][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171368245,171367693,171367665/XML).
biodb.TRACE[2024-05-18 16:07:22.571][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171368245.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171367693.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171367665.xml"
biodb.DEBUG[2024-05-18 16:07:22.576][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:22.578][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:07:22.580][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:22.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:22.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:22.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:22.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:22.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:22.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:22.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:22.597][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:22.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:22.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.601][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:22.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:22.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.607][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:22.609][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:22.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.611][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:22.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:22.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.618][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:22.619][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:22.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.621][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:22.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.628][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:22.629][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:22.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.631][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:22.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:22.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.638][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:22.639][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:22.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.641][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:22.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:22.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.648][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:22.649][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:22.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.651][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:22.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:22.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.658][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:22.659][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:22.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.662][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.663][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:22.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:22.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.668][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:22.669][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:22.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.672][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:22.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:22.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:22.680][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:22.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.682][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:22.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:22.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:22.690][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:22.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.692][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:22.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.699][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:22.700][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:22.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.702][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.704][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:22.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:22.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.709][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:22.710][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:22.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.713][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:22.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:22.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.719][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:22.720][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:22.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.723][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:22.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:22.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.729][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:22.731][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:22.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.733][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:22.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:22.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.740][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:22.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:22.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:22.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:22.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:22.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:22.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.754][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:22.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:22.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:22.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:22.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:22.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.769][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:22.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:22.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:22.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:22.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:22.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:22.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.784][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:22.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:22.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:22.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:22.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:22.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:22.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.799][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:22.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:22.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:22.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:22.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:22.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:22.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:22.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:22.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:22.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:22.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:22.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:22.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:22.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:22.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:22.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:22.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:22.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:22.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:22.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:22.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:22.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:22.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:22.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:22.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:22.869][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:22.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:22.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.872][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:22.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:22.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.879][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:22.880][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:22.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.883][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:22.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:22.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.890][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:22.891][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:22.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.894][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:22.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:22.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.900][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:22.902][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:22.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.904][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:22.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:22.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.911][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:22.912][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:22.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.914][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:22.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:22.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.921][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:22.922][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:22.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.925][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:22.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:22.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.931][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:22.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:22.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.944][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.945][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:22.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:22.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.950][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:22.951][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:22.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.954][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:22.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:22.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.960][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:22.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:22.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.964][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:22.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:22.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:22.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:22.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.974][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:22.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:22.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.980][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:22.982][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:22.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.984][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.986][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:22.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:22.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.990][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:22.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:22.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.994][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:22.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:22.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:22.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:22.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.001][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:23.002][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:23.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.004][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.006][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:23.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:23.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.011][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:23.012][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:23.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.014][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:23.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:23.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.021][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:23.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.036][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:23.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.050][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:23.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.065][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:23.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.079][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:23.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:23.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:23.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:23.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:23.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:23.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:23.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:23.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:23.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:23.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:23.150][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.151][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.153][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.160][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.161][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.163][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.170][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.171][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.174][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.180][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.182][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.184][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.191][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.193][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.195][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.202][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.203][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.206][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.217][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:23.218][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.221][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.222][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:23.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.228][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:23.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:23.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.232][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:23.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:23.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.239][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:23.240][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:23.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.242][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:23.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:23.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.249][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:23.250][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:23.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.253][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:23.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:23.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.260][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:23.261][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:23.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.263][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.265][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:23.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:23.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.271][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:23.273][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:23.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.275][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:23.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:23.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.282][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:23.284][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:23.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.286][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:23.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:23.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.293][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:23.295][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:23.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.299][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:23.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:23.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.306][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:23.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:23.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.322][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:23.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:23.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.339][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:23.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:23.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.354][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:23.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.376][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:23.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:23.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:23.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:23.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:23.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:23.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:23.474][self$createEntryFromContent] Accession numbers: 171368245, 171367693, 171367665.
biodb.DEBUG[2024-05-18 16:07:23.495][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:23.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:23.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:23.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:23.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:23.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:23.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:23.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:23.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.540][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:23.541][private$selectFields]
biodb.TRACE[2024-05-18 16:07:23.543][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:23.544][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:23.545][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:23.546][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.547][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.550][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.552][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.555][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.556][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:23.557][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:23.558][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.560][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.562][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.563][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:23.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.580][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171368245].
biodb.DEBUG[2024-05-18 16:07:23.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:23.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:23.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:23.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:23.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:23.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:23.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:23.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.613][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:23.614][private$selectFields]
biodb.TRACE[2024-05-18 16:07:23.615][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:23.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:23.618][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:23.619][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.620][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.623][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.624][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.626][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.628][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.630][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:23.631][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:23.632][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.634][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.636][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.637][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.655][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367693].
biodb.DEBUG[2024-05-18 16:07:23.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:23.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:23.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:23.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:23.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:23.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:23.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:23.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.685][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:23.687][private$selectFields]
biodb.TRACE[2024-05-18 16:07:23.689][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:23.691][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:23.693][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:23.695][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.698][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.700][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.705][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.707][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:23.708][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:23.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.713][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.714][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:23.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:23.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367665].
biodb.DEBUG[2024-05-18 16:07:23.732][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:23.733][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:07:23.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:23.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:23.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:23.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:23.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:23.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:23.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:23.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:23.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:23.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:23.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:23.881][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:23.885][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:23.886][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:23.888][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:23.952][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:23.954][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:23.955][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:23.957][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:24.315][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:24.318][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content"
biodb.TRACE[2024-05-18 16:07:24.323][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.request"
biodb.DEBUG[2024-05-18 16:07:24.326][private$loadEntries] Creating entries from ids [2]: "171372625, 171372572".
biodb.DEBUG[2024-05-18 16:07:24.328][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-18 16:07:24.330][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171372625, 171372572".
biodb.TRACE[2024-05-18 16:07:24.331][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-05-18 16:07:24.333][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:24.334][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:24.336][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:24.337][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:24.338][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:24.339][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-05-18 16:07:24.342][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171372625,171372572/XML".
biodb.DEBUG[2024-05-18 16:07:24.344][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:24.345][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:24.347][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171372625,171372572/XML".
biodb.TRACE[2024-05-18 16:07:24.477][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171372625,171372572/XML).
biodb.TRACE[2024-05-18 16:07:24.609][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171372625.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171372572.xml"
biodb.DEBUG[2024-05-18 16:07:24.728][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:24.731][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-05-18 16:07:24.733][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:24.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:24.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:24.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:24.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:24.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:24.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:24.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:24.751][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:24.752][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:24.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.755][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:24.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:24.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.761][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:24.763][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:24.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.765][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:24.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:24.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.772][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:24.773][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:24.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.775][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:24.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:24.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.782][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:24.783][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:24.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.786][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:24.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:24.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.793][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:24.794][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:24.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:24.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:24.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.803][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:24.804][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:24.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.807][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:24.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:24.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.813][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:24.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:24.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.817][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.819][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:24.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:24.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.824][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:24.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:24.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.828][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:24.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:24.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:24.836][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:24.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.838][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:24.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:24.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.845][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:24.846][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:24.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.849][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:24.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:24.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.855][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:24.857][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:24.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.859][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.861][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:24.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:24.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.866][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:24.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:24.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.869][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:24.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:24.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.876][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:24.877][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:24.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.880][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:24.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:24.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.887][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:24.889][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:24.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.891][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:24.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:24.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.898][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:24.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:24.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:24.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:24.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:24.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:24.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.913][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:24.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:24.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:24.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:24.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:24.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:24.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.928][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:24.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:24.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:24.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:24.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:24.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:24.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.943][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:24.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:24.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:24.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:24.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:24.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:24.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.959][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:24.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:24.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:24.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:24.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:24.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:24.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:24.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:24.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:24.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:24.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:24.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:24.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:24.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:24.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:25.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:25.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:25.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:25.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:25.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:25.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:25.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:25.039][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.043][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.050][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:25.051][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:25.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.053][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:25.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:25.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.060][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:25.062][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:25.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.064][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:25.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:25.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.071][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:25.072][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:25.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.074][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:25.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:25.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.081][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:25.082][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:25.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.085][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:25.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:25.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.095][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:25.096][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:25.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.099][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:25.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:25.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.105][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:25.107][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:25.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.109][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.111][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:25.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:25.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.116][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:25.117][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:25.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.119][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:25.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:25.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.126][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:25.127][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:25.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.130][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:25.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:25.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:25.138][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:25.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.140][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:25.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:25.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.147][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:25.148][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:25.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.155][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:25.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:25.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.161][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:25.163][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:25.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.165][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:25.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:25.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.172][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:25.173][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:25.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.176][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:25.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:25.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.183][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:25.184][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:25.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.187][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:25.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:25.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.194][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:25.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:25.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:25.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:25.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:25.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.213][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:25.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:25.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:25.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:25.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:25.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:25.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.228][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:25.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:25.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:25.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:25.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:25.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:25.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.243][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:25.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:25.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:25.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:25.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:25.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:25.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.259][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:25.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:25.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:25.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:25.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:25.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:25.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:25.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:25.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:25.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:25.350][self$createEntryFromContent] Accession numbers: 171372625, 171372572.
biodb.DEBUG[2024-05-18 16:07:25.352][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:25.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:25.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:25.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:25.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:25.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:25.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:25.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:25.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:25.415][private$selectFields]
biodb.TRACE[2024-05-18 16:07:25.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:25.418][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:25.419][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:25.420][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.421][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.424][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.425][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.426][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.428][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.430][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:25.439][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:25.440][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.441][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.444][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.445][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:25.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.461][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:07:25.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:25.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:25.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:25.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:25.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:25.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:25.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:25.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.486][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:25.487][private$selectFields]
biodb.TRACE[2024-05-18 16:07:25.488][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:25.489][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:25.491][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:25.492][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.493][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.495][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.497][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.498][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.500][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.501][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:25.503][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:25.504][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.505][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.507][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.509][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:25.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.525][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-05-18 16:07:25.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:25.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:25.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:25.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:25.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:25.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:25.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:25.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.550][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:25.551][private$selectFields]
biodb.TRACE[2024-05-18 16:07:25.553][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:25.554][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:25.555][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:25.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.557][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.560][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.561][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.562][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.565][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.566][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:25.567][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:25.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.572][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.573][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:25.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:25.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:25.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372572].
biodb.DEBUG[2024-05-18 16:07:25.591][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:25.592][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:25.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:25.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:25.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:25.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:25.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:25.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:25.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:25.614][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:25.618][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:25.619][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:25.621][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:25.675][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:25.677][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:25.679][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:25.681][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:25.739][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:25.742][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-05-18 16:07:26.244][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-05-18 16:07:26.279][private$loadEntries] Creating entries from ids [3]: "171374155, 171374057, 171369134".
biodb.DEBUG[2024-05-18 16:07:26.281][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:07:26.283][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171374155, 171374057, 171369134".
biodb.TRACE[2024-05-18 16:07:26.284][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:07:26.286][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:26.287][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:26.289][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:26.290][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:26.291][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:26.293][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:07:26.295][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374155,171374057,171369134/XML".
biodb.DEBUG[2024-05-18 16:07:26.298][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:26.299][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:26.300][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374155,171374057,171369134/XML".
biodb.TRACE[2024-05-18 16:07:26.443][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374155,171374057,171369134/XML).
biodb.TRACE[2024-05-18 16:07:26.578][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374155.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374057.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171369134.xml"
biodb.DEBUG[2024-05-18 16:07:26.583][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:26.585][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:07:26.587][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:26.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:26.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:26.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:26.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:26.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:26.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:26.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:26.605][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:26.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:26.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.609][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:26.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:26.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.616][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:26.617][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:26.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.620][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:26.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:26.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.627][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:26.628][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:26.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.630][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:26.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:26.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.638][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:26.639][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:26.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.641][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:26.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:26.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.648][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:26.650][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:26.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.652][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:26.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:26.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.659][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:26.660][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:26.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.663][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:26.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:26.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.670][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:26.671][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:26.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.673][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.675][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:26.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:26.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.680][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:26.681][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:26.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.684][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:26.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:26.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.690][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:26.692][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:26.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.694][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:26.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:26.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.701][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:26.702][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:26.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.704][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:26.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:26.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.711][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:26.712][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:26.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.715][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.716][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:26.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:26.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.720][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:26.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:26.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.737][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:26.738][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:26.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.740][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:26.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:26.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.747][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:26.748][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:26.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.751][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:26.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:26.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.758][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:26.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:26.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:26.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:26.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:26.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:26.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.772][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:26.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:26.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:26.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:26.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:26.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:26.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.787][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:26.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:26.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:26.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:26.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:26.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:26.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.802][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:26.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:26.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:26.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:26.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:26.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:26.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.817][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:26.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:26.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:26.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:26.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:26.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:26.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:26.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:26.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:26.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:26.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:26.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:26.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:26.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:26.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:26.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:26.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:26.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:26.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:26.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:26.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:26.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:26.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:26.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:26.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:26.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:26.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:26.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:26.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:26.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:26.888][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:26.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:26.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.891][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:26.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:26.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.898][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:26.899][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:26.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.902][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:26.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:26.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.908][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:26.910][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:26.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.912][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:26.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:26.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.919][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:26.920][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:26.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.922][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:26.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:26.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.929][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:26.930][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:26.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.933][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:26.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.939][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:26.941][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:26.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.943][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:26.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:26.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.950][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:26.951][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:26.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.953][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.955][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:26.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:26.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.960][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:26.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:26.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.964][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:26.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:26.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.971][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:26.972][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:26.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.974][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:26.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.981][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:26.982][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:26.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.985][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:26.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.992][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:26.993][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:26.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:26.995][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:26.997][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:26.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:26.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.001][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:27.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.007][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:27.009][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:27.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.011][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:27.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:27.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.018][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:27.019][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:27.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.022][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:27.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:27.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.029][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:27.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.044][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.058][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:27.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.074][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:27.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.089][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:27.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:27.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:27.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:27.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:27.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:27.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:27.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:27.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:27.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:27.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:27.168][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.172][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.178][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.180][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.182][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.189][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.190][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.192][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.199][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.200][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.203][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.210][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.211][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.213][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.220][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.221][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.224][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.230][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:27.232][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:27.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.234][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.236][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:27.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:27.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.241][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:27.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:27.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.244][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:27.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:27.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.251][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:27.253][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:27.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.255][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:27.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:27.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:27.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:27.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.265][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:27.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:27.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.272][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:27.273][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:27.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.276][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.277][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:27.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:27.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.283][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:27.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.286][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:27.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.293][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:27.295][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:27.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.297][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:27.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:27.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.304][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:27.305][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:27.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.308][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:27.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.315][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:27.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:27.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.330][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:27.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:27.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.346][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:27.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:27.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.361][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:27.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:27.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.376][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:27.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:27.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:27.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:27.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:27.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:27.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:27.472][self$createEntryFromContent] Accession numbers: 171374155, 171374057, 171369134.
biodb.DEBUG[2024-05-18 16:07:27.474][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:27.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:27.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:27.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:27.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:27.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:27.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:27.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.500][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:27.501][private$selectFields]
biodb.TRACE[2024-05-18 16:07:27.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:27.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:27.504][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:27.505][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.507][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.509][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.510][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.511][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.514][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.515][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:27.516][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:27.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.521][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.522][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:27.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.538][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-05-18 16:07:27.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:27.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:27.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:27.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:27.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:27.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:27.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:27.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.570][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:27.571][private$selectFields]
biodb.TRACE[2024-05-18 16:07:27.572][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:27.573][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:27.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:27.576][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.577][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.579][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.584][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.585][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:27.586][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:27.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.591][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.592][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:27.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.608][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-05-18 16:07:27.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:27.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:27.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:27.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:27.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:27.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:27.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:27.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.633][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:27.634][private$selectFields]
biodb.TRACE[2024-05-18 16:07:27.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:27.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:27.637][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:27.639][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.640][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.642][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.643][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.645][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.647][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.648][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:27.649][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:27.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.654][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.655][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:27.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:27.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.671][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171369134].
biodb.DEBUG[2024-05-18 16:07:27.673][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:27.674][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:07:27.685][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:27.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:27.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.690][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:27.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:27.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:07:27.700][biodb::testThat]
biodb.INFO [2024-05-18 16:07:27.701][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-05-18 16:07:27.702][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:27.703][biodb::testThat]
biodb.TRACE[2024-05-18 16:07:27.707][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:07:27.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:07:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.712][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:07:27.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:07:27.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:27.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:27.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:27.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:27.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:27.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:27.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:27.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:27.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:27.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:27.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:27.776][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:27.780][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:27.781][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:27.783][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:27.835][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:27.837][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:27.838][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:27.840][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:27.930][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:27.932][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content"
biodb.TRACE[2024-05-18 16:07:28.244][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.request"
biodb.DEBUG[2024-05-18 16:07:28.248][private$loadEntries] Creating entries from ids [1]: "171370721".
biodb.DEBUG[2024-05-18 16:07:28.249][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:07:28.251][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171370721".
biodb.TRACE[2024-05-18 16:07:28.256][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:07:28.257][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:28.259][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:28.260][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:28.261][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:28.262][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:28.264][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-18 16:07:28.266][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171370721/XML".
biodb.DEBUG[2024-05-18 16:07:28.269][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:28.270][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:28.271][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171370721/XML".
biodb.TRACE[2024-05-18 16:07:28.369][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171370721/XML).
biodb.TRACE[2024-05-18 16:07:28.483][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171370721.xml"
biodb.DEBUG[2024-05-18 16:07:28.486][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:28.488][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:07:28.489][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:28.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:28.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:28.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:28.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:28.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:28.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:28.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:28.508][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:28.509][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:28.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.512][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:28.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:28.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.519][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:28.520][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:28.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.522][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:28.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:28.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.529][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:28.531][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:28.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:28.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:28.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.540][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:28.541][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:28.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.543][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:28.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:28.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.550][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:28.551][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:28.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.554][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:28.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:28.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.560][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:28.562][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:28.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.564][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:28.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:28.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.571][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:28.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:28.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.574][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.576][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:28.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:28.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.581][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:28.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:28.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.585][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:28.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:28.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:28.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:28.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.595][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:28.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:28.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.602][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:28.603][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:28.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.605][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:28.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.613][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:28.614][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:28.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.618][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:28.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:28.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.623][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:28.625][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:28.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.627][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:28.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:28.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.634][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:28.636][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:28.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.645][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.649][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:28.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:28.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.655][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:28.657][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:28.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.661][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.663][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:28.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:28.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.673][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:28.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:28.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:28.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:28.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:28.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:28.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.698][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:28.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:28.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:28.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:28.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:28.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.723][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:28.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:28.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:28.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:28.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:28.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.742][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:28.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:28.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:28.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:28.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:28.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:28.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.757][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:28.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:28.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:28.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:28.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:28.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:28.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:28.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:28.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:28.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:28.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:28.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:28.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:28.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:28.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:28.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:28.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:28.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:28.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:28.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:28.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:28.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:28.832][self$createEntryFromContent] Accession numbers: 171370721.
biodb.DEBUG[2024-05-18 16:07:28.833][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:28.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:28.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:28.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:28.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:28.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:28.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:28.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:28.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.859][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:28.860][private$selectFields]
biodb.TRACE[2024-05-18 16:07:28.861][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:28.863][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:28.864][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:28.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.866][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.869][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.870][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.871][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.875][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:28.876][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:28.877][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.879][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.881][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.882][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:28.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.899][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:07:28.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:28.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:28.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:28.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:28.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:28.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:28.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:28.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.925][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:28.926][private$selectFields]
biodb.TRACE[2024-05-18 16:07:28.927][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:28.928][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:28.930][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:28.931][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.932][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.935][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.939][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.941][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:28.942][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:28.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.947][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.948][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:28.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-05-18 16:07:28.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:28.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:28.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:28.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:28.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:28.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:28.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:28.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:28.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:28.990][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:28.991][private$selectFields]
biodb.TRACE[2024-05-18 16:07:28.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:28.994][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:28.995][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:28.996][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.997][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:28.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.000][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.001][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.002][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.004][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.006][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:29.007][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:29.008][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.009][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.012][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.013][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:29.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171370721].
biodb.DEBUG[2024-05-18 16:07:29.031][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:29.032][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:29.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:29.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:29.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:29.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:29.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:29.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:29.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:29.054][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:29.058][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:29.059][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:29.061][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:29.112][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:29.113][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:29.115][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:29.117][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:29.162][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:29.165][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-05-18 16:07:29.170][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-05-18 16:07:29.173][private$loadEntries] Creating entries from ids [3]: "171341956, 171226048, 171219496".
biodb.DEBUG[2024-05-18 16:07:29.174][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:07:29.176][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171341956, 171226048, 171219496".
biodb.TRACE[2024-05-18 16:07:29.178][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:07:29.180][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:29.181][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:29.182][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:29.184][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:29.185][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:29.186][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:07:29.189][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171226048,171219496/XML".
biodb.DEBUG[2024-05-18 16:07:29.198][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:29.201][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:29.203][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171226048,171219496/XML".
biodb.TRACE[2024-05-18 16:07:29.367][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171226048,171219496/XML).
biodb.TRACE[2024-05-18 16:07:29.522][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171341956.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171226048.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171219496.xml"
biodb.DEBUG[2024-05-18 16:07:29.527][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:29.528][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:07:29.530][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:29.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:29.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:29.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:29.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:29.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:29.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:29.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:29.548][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:29.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:29.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.551][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:29.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:29.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.558][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.559][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.561][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.568][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:29.569][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:29.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.571][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:29.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:29.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.578][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.579][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.581][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.588][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:29.589][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:29.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.592][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:29.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:29.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.598][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:29.599][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:29.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.602][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:29.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:29.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.608][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:29.609][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:29.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.612][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.613][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:29.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:29.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.618][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:29.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:29.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.622][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:29.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:29.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:29.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:29.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.632][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:29.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:29.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.638][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:29.639][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:29.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.642][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:29.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:29.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.648][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:29.649][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:29.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.652][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.653][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:29.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:29.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.658][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:29.659][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:29.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.661][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:29.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:29.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.668][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:29.669][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:29.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.671][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:29.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.678][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:29.679][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:29.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.682][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:29.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.688][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:29.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.703][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:29.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.717][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:29.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:29.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:29.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:29.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:29.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.732][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:29.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:29.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:29.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:29.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:29.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:29.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.746][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:29.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:29.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:29.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:29.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:29.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:29.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:29.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:29.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:29.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:29.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:29.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:29.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:29.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:29.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:29.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:29.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:29.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:29.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:29.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:29.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:29.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:29.816][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:29.818][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:29.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.820][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:29.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:29.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.826][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.828][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.830][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.836][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:29.838][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:29.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.840][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:29.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:29.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.846][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.848][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.850][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.857][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:29.858][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:29.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.860][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:29.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:29.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.867][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:29.868][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:29.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.870][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:29.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:29.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.877][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:29.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:29.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.881][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.882][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:29.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:29.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.887][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:29.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:29.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.891][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:29.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:29.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:29.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:29.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.901][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:29.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:29.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:29.909][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:29.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:29.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:29.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.938][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:29.941][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:29.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.944][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.945][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:29.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:29.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.950][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:29.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:29.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.954][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:29.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:29.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.961][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:29.962][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:29.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.964][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:29.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:29.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.971][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:29.972][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:29.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.975][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:29.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:29.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.982][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:29.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:29.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:29.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:29.996][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:29.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:29.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:30.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:30.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:30.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:30.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.011][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:30.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.025][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:30.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.040][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:30.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:30.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:30.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:30.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:30.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:30.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:30.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:30.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:30.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:30.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:30.109][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.110][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.112][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.119][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:30.120][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:30.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.122][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:30.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:30.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.129][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.130][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.132][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.139][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:30.140][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:30.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.142][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:30.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.149][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.150][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.159][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.160][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.162][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.169][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:30.170][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.172][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.174][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:30.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.179][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:30.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:30.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.182][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:30.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:30.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:30.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:30.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.192][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:30.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:30.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.198][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:30.200][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:30.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:30.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:30.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.208][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:30.210][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:30.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.212][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.213][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:30.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:30.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.218][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:30.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:30.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.222][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:30.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:30.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.228][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:30.229][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:30.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.232][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:30.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:30.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.239][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:30.240][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:30.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.243][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:30.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:30.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.250][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:30.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:30.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:30.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:30.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:30.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:30.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:30.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:30.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.279][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:30.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:30.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.294][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:30.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:30.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.309][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:30.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:30.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:30.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:30.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:30.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:30.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:30.417][self$createEntryFromContent] Accession numbers: 171341956, 171226048, 171219496.
biodb.DEBUG[2024-05-18 16:07:30.418][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:30.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:30.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:30.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:30.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:30.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:30.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:30.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.445][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:30.446][private$selectFields]
biodb.TRACE[2024-05-18 16:07:30.447][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:30.448][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:30.449][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:30.451][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.452][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.454][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.456][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.457][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.459][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.460][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:30.462][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:30.463][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.464][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.467][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.468][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:30.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.484][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171341956].
biodb.DEBUG[2024-05-18 16:07:30.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:30.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:30.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:30.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:30.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:30.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:30.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:30.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.510][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:30.511][private$selectFields]
biodb.TRACE[2024-05-18 16:07:30.512][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:30.513][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:30.515][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:30.516][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.520][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.521][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.522][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.525][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:30.527][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:30.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.532][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.533][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:30.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.550][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171226048].
biodb.DEBUG[2024-05-18 16:07:30.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:30.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:30.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:30.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:30.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:30.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:30.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.576][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:30.578][private$selectFields]
biodb.TRACE[2024-05-18 16:07:30.579][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:30.580][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:30.581][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:30.582][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.584][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.586][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.591][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.592][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:30.593][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:30.594][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.596][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.598][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.599][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:30.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:30.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171219496].
biodb.DEBUG[2024-05-18 16:07:30.617][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:30.619][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:07:30.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:30.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:30.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:30.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:30.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:30.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:30.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:30.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:30.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:30.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:30.695][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:30.699][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:30.700][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:30.702][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:30.754][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:30.755][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:30.757][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:30.760][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:30.809][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:30.814][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content"
biodb.TRACE[2024-05-18 16:07:30.820][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.request"
biodb.DEBUG[2024-05-18 16:07:30.824][private$loadEntries] Creating entries from ids [3]: "171364948, 171326566, 171268275".
biodb.DEBUG[2024-05-18 16:07:30.825][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:07:30.827][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171364948, 171326566, 171268275".
biodb.TRACE[2024-05-18 16:07:30.829][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:07:30.831][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:30.832][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:30.834][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:30.835][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:30.837][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:30.838][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:07:30.840][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364948,171326566,171268275/XML".
biodb.DEBUG[2024-05-18 16:07:30.843][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:30.844][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:30.846][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364948,171326566,171268275/XML".
biodb.TRACE[2024-05-18 16:07:31.028][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364948,171326566,171268275/XML).
biodb.TRACE[2024-05-18 16:07:31.215][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171364948.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171326566.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171268275.xml"
biodb.DEBUG[2024-05-18 16:07:31.221][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:31.224][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:07:31.227][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:31.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:31.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:31.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:31.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:31.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:31.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:31.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:31.248][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.249][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.251][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.258][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.260][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.262][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.279][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.280][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.283][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.290][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.292][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.294][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.301][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.303][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.305][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.312][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.313][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.316][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.323][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:31.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:31.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.327][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.329][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:31.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.334][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:31.335][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:31.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.338][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:31.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:31.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:31.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:31.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.348][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.355][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:31.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:31.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.359][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:31.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:31.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.366][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:31.367][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:31.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.369][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:31.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:31.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.376][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:31.378][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:31.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.380][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:31.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:31.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.387][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:31.388][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:31.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.391][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:31.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:31.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.398][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:31.399][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:31.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.401][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:31.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:31.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.412][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:31.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.428][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:31.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.443][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:31.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:31.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.474][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:31.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:31.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:31.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:31.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:31.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:31.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:31.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:31.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:31.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:31.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:31.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:31.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:31.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:31.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:31.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:31.547][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.551][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.558][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.559][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.562][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.569][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.570][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.572][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.579][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.581][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.583][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.590][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.591][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.594][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.601][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.602][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.604][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.611][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:31.613][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:31.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.615][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.617][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:31.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:31.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.622][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:31.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:31.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.625][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:31.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:31.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.632][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:31.634][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:31.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.636][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:31.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.643][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:31.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:31.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.646][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:31.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:31.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.653][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:31.654][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:31.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.657][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.658][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:31.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:31.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.664][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:31.665][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:31.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.667][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:31.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.674][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:31.675][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:31.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.678][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:31.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:31.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.685][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:31.686][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:31.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.688][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:31.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:31.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.695][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:31.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.718][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:31.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.734][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:31.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.750][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:31.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.765][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:31.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:31.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:31.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:31.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:31.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:31.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:31.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:31.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:31.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:31.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:31.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:31.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:31.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:31.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:31.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:31.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:31.837][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.838][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.841][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:31.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:31.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.847][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.849][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.851][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:31.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.858][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.859][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.862][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:31.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.868][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.870][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.872][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.879][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.880][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.883][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:31.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.890][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.891][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.893][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:31.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.900][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:31.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:31.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.904][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.905][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:31.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:31.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.910][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:31.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:31.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.914][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:31.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:31.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:31.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:31.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.924][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:31.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:31.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:31.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:31.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.934][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:31.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:31.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.941][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:31.942][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:31.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.945][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.946][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:31.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:31.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.951][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:31.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:31.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.955][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:31.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:31.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.961][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:31.963][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:31.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.965][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:31.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:31.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.971][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:31.973][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:31.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.975][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:31.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:31.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:31.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:31.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:31.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:31.997][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:31.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.012][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:32.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.027][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:32.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.042][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:32.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:32.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:32.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:32.149][self$createEntryFromContent] Accession numbers: 171364948, 171326566, 171268275.
biodb.DEBUG[2024-05-18 16:07:32.150][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:32.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:32.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:32.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:32.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:32.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:32.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:32.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:32.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.177][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:32.178][private$selectFields]
biodb.TRACE[2024-05-18 16:07:32.179][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:32.181][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:32.182][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:32.183][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.184][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.187][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.188][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.189][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.192][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.193][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:32.194][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:32.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.199][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.201][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:32.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-18 16:07:32.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:32.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:32.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:32.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:32.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:32.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:32.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:32.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.243][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:32.244][private$selectFields]
biodb.TRACE[2024-05-18 16:07:32.245][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:32.246][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:32.248][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:32.249][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.253][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.254][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.255][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.257][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:32.260][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:32.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.265][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.266][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:32.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.283][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326566].
biodb.DEBUG[2024-05-18 16:07:32.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:32.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:32.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:32.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:32.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:32.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:32.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:32.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.308][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:32.309][private$selectFields]
biodb.TRACE[2024-05-18 16:07:32.311][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:32.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:32.313][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:32.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.316][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.318][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.319][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.321][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.323][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.324][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:32.325][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:32.327][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.328][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.330][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.332][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:32.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.349][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171268275].
biodb.DEBUG[2024-05-18 16:07:32.350][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:32.351][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:32.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:32.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:32.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:32.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:32.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:32.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:32.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:32.374][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:32.378][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:32.379][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:32.381][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:32.440][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:32.442][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:32.443][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:32.445][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:32.513][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:32.516][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-05-18 16:07:32.521][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-05-18 16:07:32.525][private$loadEntries] Creating entries from ids [1]: "171217291".
biodb.DEBUG[2024-05-18 16:07:32.526][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:07:32.528][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171217291".
biodb.TRACE[2024-05-18 16:07:32.530][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:07:32.531][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:32.532][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:32.534][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:32.535][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:32.536][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:32.538][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-18 16:07:32.540][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171217291/XML".
biodb.DEBUG[2024-05-18 16:07:32.542][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:32.544][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:32.545][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171217291/XML".
biodb.TRACE[2024-05-18 16:07:32.627][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171217291/XML).
biodb.TRACE[2024-05-18 16:07:32.722][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171217291.xml"
biodb.DEBUG[2024-05-18 16:07:32.725][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:32.726][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:07:32.728][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:32.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:32.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:32.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:32.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:32.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:32.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:32.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:32.746][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.750][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.757][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.758][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.761][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.768][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.769][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.771][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.778][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:32.779][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:32.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:32.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:32.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.788][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.790][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.792][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.799][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.800][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.803][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.809][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:32.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:32.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.813][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.815][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:32.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:32.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.820][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:32.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:32.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.823][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:32.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:32.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:32.832][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:32.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.834][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:32.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:32.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.841][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:32.842][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:32.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.844][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:32.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:32.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.851][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:32.852][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:32.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.855][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.856][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:32.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:32.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.861][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:32.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:32.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.865][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:32.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:32.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.881][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:32.882][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:32.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.885][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:32.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:32.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.892][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:32.894][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:32.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.896][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:32.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:32.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.903][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:32.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:32.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:32.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:32.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:32.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:32.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.918][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:32.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:32.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.934][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:32.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:32.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.949][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:32.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:32.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.964][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:32.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:32.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:32.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:32.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:32.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:32.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:32.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:32.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:32.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:33.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:33.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:33.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:33.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:33.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:33.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:33.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:33.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:33.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:33.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:33.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:33.034][self$createEntryFromContent] Accession numbers: 171217291.
biodb.DEBUG[2024-05-18 16:07:33.036][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:33.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:33.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.062][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.063][private$selectFields]
biodb.TRACE[2024-05-18 16:07:33.064][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:33.066][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:33.067][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.068][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.072][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.073][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.074][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.077][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.078][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.079][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.080][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.084][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.085][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:33.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.102][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171226048].
biodb.DEBUG[2024-05-18 16:07:33.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:33.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.128][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.129][private$selectFields]
biodb.TRACE[2024-05-18 16:07:33.130][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:33.131][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:33.132][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.134][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.137][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.142][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.143][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.145][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.150][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.151][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:33.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171219496].
biodb.DEBUG[2024-05-18 16:07:33.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:33.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.193][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.194][private$selectFields]
biodb.TRACE[2024-05-18 16:07:33.196][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:33.197][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:33.198][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.203][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.208][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.209][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.210][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.211][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.213][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.215][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.216][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:33.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.233][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171217291].
biodb.DEBUG[2024-05-18 16:07:33.234][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:33.235][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:07:33.247][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:33.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:33.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.252][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:33.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:33.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:07:33.263][biodb::testThat]
biodb.INFO [2024-05-18 16:07:33.264][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-05-18 16:07:33.266][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:33.267][biodb::testThat]
biodb.TRACE[2024-05-18 16:07:33.271][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:07:33.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:07:33.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.276][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:07:33.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:07:33.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:33.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:33.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:33.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:33.358][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:33.360][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-18 16:07:33.362][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:33.364][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-18 16:07:33.366][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:33.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:33.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.394][private$selectFields]
biodb.TRACE[2024-05-18 16:07:33.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:33.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:33.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.401][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.403][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.408][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.409][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.410][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.412][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.413][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.415][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.417][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:33.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.433][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:07:33.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:33.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.460][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.461][private$selectFields]
biodb.TRACE[2024-05-18 16:07:33.462][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:33.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:33.464][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.466][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.467][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.469][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.470][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.472][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.474][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.475][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.477][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.482][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.483][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:33.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.500][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:07:33.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:33.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.526][private$selectFields]
biodb.TRACE[2024-05-18 16:07:33.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:33.529][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:33.530][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.533][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.535][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.536][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.538][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.540][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.541][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.542][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.544][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.545][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.547][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.548][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:33.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.565][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171375796].
biodb.DEBUG[2024-05-18 16:07:33.566][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:33.567][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:33.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:33.589][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:33.593][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:33.594][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-18 16:07:33.596][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:33.598][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-18 16:07:33.600][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:33.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:33.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.626][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.627][private$selectFields]
biodb.TRACE[2024-05-18 16:07:33.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:33.629][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:33.630][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.632][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.633][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.635][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.637][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.638][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.640][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.641][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.643][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.645][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.647][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.649][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:33.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.665][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171368245].
biodb.DEBUG[2024-05-18 16:07:33.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:33.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.691][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.692][private$selectFields]
biodb.TRACE[2024-05-18 16:07:33.693][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:33.694][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:33.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.697][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.698][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.701][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.705][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.707][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.708][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.713][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.714][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:33.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367693].
biodb.DEBUG[2024-05-18 16:07:33.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:33.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.764][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.765][private$selectFields]
biodb.TRACE[2024-05-18 16:07:33.767][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:33.768][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:33.769][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.770][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.772][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.774][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.775][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.779][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.780][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.782][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.784][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.786][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.788][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:33.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.804][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367665].
biodb.DEBUG[2024-05-18 16:07:33.806][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:33.807][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:07:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:33.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:33.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:33.903][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:33.907][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:33.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-18 16:07:33.910][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:33.912][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-18 16:07:33.914][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:33.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:33.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.940][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.942][private$selectFields]
biodb.TRACE[2024-05-18 16:07:33.943][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:33.944][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:33.945][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.946][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.950][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.951][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.952][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.955][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.956][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.957][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:33.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.960][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.962][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.963][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:33.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:33.979][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:07:33.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:33.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:33.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:33.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:33.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:33.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:33.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:33.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:33.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.006][private$selectFields]
biodb.TRACE[2024-05-18 16:07:34.007][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:34.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:34.009][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.014][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.019][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.020][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.021][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.023][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.024][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.026][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.027][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:34.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.044][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-05-18 16:07:34.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:34.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:34.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:34.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:34.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:34.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:34.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:34.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.069][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.070][private$selectFields]
biodb.TRACE[2024-05-18 16:07:34.071][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:34.072][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:34.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.075][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.078][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.080][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.081][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.083][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.084][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.086][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.087][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.088][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.091][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.092][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:34.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.108][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372572].
biodb.DEBUG[2024-05-18 16:07:34.109][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:34.110][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:34.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:34.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:34.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:34.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:34.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:34.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:34.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:34.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:34.137][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:34.138][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-18 16:07:34.140][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:34.655][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-18 16:07:34.657][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:34.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:34.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:34.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:34.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:34.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:34.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:34.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:34.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.684][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.685][private$selectFields]
biodb.TRACE[2024-05-18 16:07:34.686][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:34.694][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:34.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.698][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.702][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.705][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.707][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.709][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.710][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.711][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.712][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.715][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.716][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:34.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.734][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-05-18 16:07:34.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:34.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:34.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:34.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:34.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:34.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:34.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:34.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.760][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.761][private$selectFields]
biodb.TRACE[2024-05-18 16:07:34.762][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:34.763][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:34.765][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.766][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.767][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.770][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.771][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.772][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.775][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.776][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.777][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.779][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.780][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.784][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:34.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-05-18 16:07:34.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:34.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:34.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:34.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:34.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:34.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:34.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:34.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.832][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.833][private$selectFields]
biodb.TRACE[2024-05-18 16:07:34.835][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:34.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:34.837][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.839][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.843][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.844][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.848][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.849][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.851][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:34.852][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.853][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.855][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.857][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:34.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:34.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.873][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171369134].
biodb.DEBUG[2024-05-18 16:07:34.874][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:34.876][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:07:34.906][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:34.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.911][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:34.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:34.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.921][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:34.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:34.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.925][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.926][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.928][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.930][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:07:34.932][biodb::testThat]
biodb.INFO [2024-05-18 16:07:34.933][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-05-18 16:07:34.935][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:34.936][biodb::testThat]
biodb.TRACE[2024-05-18 16:07:34.940][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:07:34.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:07:34.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.945][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:07:34.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:07:34.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:34.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:34.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:34.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:34.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:34.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:34.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:35.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:35.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:35.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:35.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:35.012][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:35.016][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:35.018][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:35.020][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:35.076][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:35.077][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:35.079][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:35.081][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:35.135][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:35.138][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-05-18 16:07:35.637][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-05-18 16:07:35.641][private$loadEntries] Creating entries from ids [2]: "171381459, 171381203".
biodb.DEBUG[2024-05-18 16:07:35.643][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-18 16:07:35.645][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171381459, 171381203".
biodb.TRACE[2024-05-18 16:07:35.647][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-05-18 16:07:35.649][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:35.650][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:35.651][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:35.653][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:35.654][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:35.655][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-05-18 16:07:35.658][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171381459,171381203/XML".
biodb.DEBUG[2024-05-18 16:07:35.660][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:35.662][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:35.663][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171381459,171381203/XML".
biodb.TRACE[2024-05-18 16:07:35.769][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171381459,171381203/XML).
biodb.TRACE[2024-05-18 16:07:35.858][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171381459.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171381203.xml"
biodb.DEBUG[2024-05-18 16:07:35.927][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:35.930][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-05-18 16:07:35.933][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:35.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:35.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:35.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:35.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:35.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:35.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:35.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:35.963][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:35.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:35.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:35.969][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:35.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:35.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:35.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:35.980][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:35.983][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:35.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:35.986][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:35.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:35.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:35.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:35.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:35.997][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:35.999][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.002][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.008][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.010][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.012][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.020][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.022][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.026][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.046][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.048][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.050][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.057][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:36.059][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:36.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.061][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.063][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:36.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.068][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:36.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:36.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.072][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:36.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:36.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:36.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:36.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.086][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:36.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:36.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:36.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.097][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:36.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.104][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:36.105][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:36.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.108][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.109][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:36.110][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:36.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.113][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:36.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:36.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.120][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:36.121][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:36.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.123][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:36.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.130][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:36.131][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:36.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.133][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:36.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.140][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.170][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:36.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.186][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:36.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.201][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:36.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:36.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:36.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:36.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:36.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:36.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:36.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:36.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:36.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:36.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:36.273][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.274][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.276][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.283][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.284][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.287][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.294][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.295][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.297][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.304][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.305][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.308][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.314][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.316][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.318][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.325][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.326][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.328][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.335][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:36.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:36.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.339][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.341][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:36.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:36.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.346][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:36.347][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:36.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.349][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:36.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:36.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.356][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:36.357][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:36.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.360][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:36.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:36.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:36.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:36.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:36.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:36.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.377][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:36.378][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:36.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.381][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.382][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:36.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:36.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.388][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:36.389][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:36.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.391][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:36.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:36.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.398][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:36.399][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:36.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.402][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:36.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:36.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.408][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:36.410][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:36.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:36.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:36.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:36.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.449][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:36.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.464][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:36.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.487][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:36.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:36.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:36.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:36.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:36.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:36.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:36.576][self$createEntryFromContent] Accession numbers: 171381459, 171381203.
biodb.DEBUG[2024-05-18 16:07:36.578][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:36.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:36.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:36.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:36.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:36.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:36.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:36.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:36.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.604][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:36.605][private$selectFields]
biodb.TRACE[2024-05-18 16:07:36.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:36.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:36.608][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:36.609][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.611][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.613][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.616][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.618][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.619][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:36.620][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:36.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.623][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.625][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.626][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:36.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.643][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381459].
biodb.DEBUG[2024-05-18 16:07:36.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:36.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:36.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:36.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:36.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:36.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:36.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:36.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.668][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:36.669][private$selectFields]
biodb.TRACE[2024-05-18 16:07:36.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:36.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:36.672][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:36.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.675][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.677][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.678][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.680][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.682][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.683][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:36.684][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:36.686][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.687][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.689][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.690][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:36.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.707][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381203].
biodb.DEBUG[2024-05-18 16:07:36.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:36.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:36.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:36.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:36.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:36.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:36.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:36.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.732][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:36.733][private$selectFields]
biodb.TRACE[2024-05-18 16:07:36.734][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:36.735][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:36.737][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:36.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.741][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.743][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.744][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.746][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.747][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:36.749][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:36.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.751][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.754][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.755][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:36.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:36.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:36.771][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:07:36.772][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:36.773][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:36.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:36.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:36.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:36.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:36.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:36.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:36.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:36.796][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:36.800][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:36.801][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:36.803][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:36.855][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:36.857][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:36.859][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:36.861][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:37.146][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:37.149][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-05-18 16:07:37.154][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-05-18 16:07:37.157][private$loadEntries] Creating entries from ids [1]: "21454935".
biodb.DEBUG[2024-05-18 16:07:37.158][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:07:37.160][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21454935".
biodb.TRACE[2024-05-18 16:07:37.162][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:07:37.163][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:37.165][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:37.166][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:37.167][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:37.168][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:37.170][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-18 16:07:37.172][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/21454935/XML".
biodb.DEBUG[2024-05-18 16:07:37.174][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:37.176][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:37.178][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/21454935/XML".
biodb.TRACE[2024-05-18 16:07:37.253][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/21454935/XML).
biodb.TRACE[2024-05-18 16:07:37.356][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/21454935.xml"
biodb.DEBUG[2024-05-18 16:07:37.359][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:37.360][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:07:37.362][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:37.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:37.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:37.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:37.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:37.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:37.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:37.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:37.380][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:37.382][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:37.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.384][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:37.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.391][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:37.392][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:37.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.395][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:37.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:37.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.401][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:37.403][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:37.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.405][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:37.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:37.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.421][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:37.422][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:37.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:37.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:37.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.432][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:37.434][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:37.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.436][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:37.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:37.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.443][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:37.444][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:37.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.447][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.453][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:37.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:37.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.457][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.459][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:37.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:37.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.464][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:37.465][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:37.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.468][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:37.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:37.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.474][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:37.475][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:37.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.479][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:37.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:37.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:37.487][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:37.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.489][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:37.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:37.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.496][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:37.497][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:37.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.500][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.501][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:37.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.506][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:37.508][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:37.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.510][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:37.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.517][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:37.518][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:37.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.520][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:37.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:37.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.528][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:37.529][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:37.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.532][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:37.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.539][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:37.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:37.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:37.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:37.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:37.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.554][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:37.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:37.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:37.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:37.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:37.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.569][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:37.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:37.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:37.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:37.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:37.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:37.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.587][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:37.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:37.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:37.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:37.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:37.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.603][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:37.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:37.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:37.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:37.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:37.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:37.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:37.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:37.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:37.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:37.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:37.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:37.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:37.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:37.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:37.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:37.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:37.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:37.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:37.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:37.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:37.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:37.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:37.675][self$createEntryFromContent] Accession numbers: 21454935.
biodb.DEBUG[2024-05-18 16:07:37.676][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:37.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:37.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:37.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:37.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:37.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:37.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:37.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:37.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.704][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:37.705][private$selectFields]
biodb.TRACE[2024-05-18 16:07:37.706][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:37.708][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:37.709][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:37.710][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.714][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.724][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:37.727][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:37.729][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.735][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.737][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:37.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.753][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [21454935].
biodb.DEBUG[2024-05-18 16:07:37.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:37.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:37.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:37.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:37.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:37.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:37.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:37.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.780][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:37.782][private$selectFields]
biodb.TRACE[2024-05-18 16:07:37.783][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:37.784][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:37.785][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:37.786][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.788][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.790][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.793][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.795][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.796][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:37.797][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:37.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.800][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.802][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.803][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:37.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-05-18 16:07:37.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:37.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:37.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:37.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:37.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:37.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:37.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:37.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.847][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:37.849][private$selectFields]
biodb.TRACE[2024-05-18 16:07:37.850][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:37.851][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:37.852][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:37.854][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.865][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.866][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.870][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.871][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:37.873][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:37.874][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.878][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.879][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:37.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:37.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-05-18 16:07:37.905][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:37.907][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:37.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:37.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:37.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:37.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:37.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:37.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:37.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:37.967][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:37.970][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:37.972][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-18 16:07:37.974][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:37.976][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-18 16:07:37.978][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:37.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:37.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:37.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:37.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:37.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:37.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:37.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:37.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:37.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:37.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.006][private$selectFields]
biodb.TRACE[2024-05-18 16:07:38.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:38.009][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:38.010][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.013][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.015][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.020][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.022][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.023][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.025][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.027][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.028][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:38.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.045][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:07:38.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:38.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:38.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:38.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:38.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:38.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:38.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:38.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.071][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.072][private$selectFields]
biodb.TRACE[2024-05-18 16:07:38.073][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:38.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:38.076][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.077][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.081][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.083][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.086][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.087][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.088][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.090][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.091][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.093][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.094][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:38.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.121][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:07:38.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:38.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:38.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:38.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:38.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:38.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:38.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:38.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.164][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.166][private$selectFields]
biodb.TRACE[2024-05-18 16:07:38.168][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:38.169][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:38.171][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.174][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.175][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.179][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.180][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.183][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.184][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.185][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.186][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.188][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.190][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.192][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:38.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171375796].
biodb.DEBUG[2024-05-18 16:07:38.219][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:38.220][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:38.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:38.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:38.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:38.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:38.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:38.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:38.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:38.243][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:38.247][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:38.248][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-18 16:07:38.250][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:38.252][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-18 16:07:38.255][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:38.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:38.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:38.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:38.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:38.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:38.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:38.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:38.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.281][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.283][private$selectFields]
biodb.TRACE[2024-05-18 16:07:38.284][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:38.285][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:38.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.288][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.291][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.296][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.297][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.299][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.304][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.306][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:38.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171368245].
biodb.DEBUG[2024-05-18 16:07:38.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:38.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:38.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:38.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:38.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:38.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:38.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:38.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.352][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.354][private$selectFields]
biodb.TRACE[2024-05-18 16:07:38.355][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:38.356][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:38.357][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.358][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.375][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.378][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.381][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.384][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:38.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.402][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367693].
biodb.DEBUG[2024-05-18 16:07:38.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:38.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:38.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:38.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:38.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:38.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:38.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:38.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.428][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.429][private$selectFields]
biodb.TRACE[2024-05-18 16:07:38.431][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:38.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:38.433][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.434][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.436][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.438][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.441][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.443][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.444][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.446][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:38.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.448][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.450][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.452][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:38.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:38.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:38.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:38.468][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367665].
biodb.DEBUG[2024-05-18 16:07:38.470][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:38.471][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:38.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:38.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:38.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:38.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:38.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:38.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:38.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:38.522][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:38.526][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:38.528][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:38.530][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:38.582][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:38.583][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:38.586][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:38.588][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:38.637][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:38.640][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-05-18 16:07:38.645][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-05-18 16:07:38.649][private$loadEntries] Creating entries from ids [3]: "171381156, 171380756, 171380739".
biodb.DEBUG[2024-05-18 16:07:38.650][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:07:38.652][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171381156, 171380756, 171380739".
biodb.TRACE[2024-05-18 16:07:38.654][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:07:38.656][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:38.657][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:38.658][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:38.660][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:38.661][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:38.662][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:07:38.665][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171381156,171380756,171380739/XML".
biodb.DEBUG[2024-05-18 16:07:38.667][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:38.668][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:38.670][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171381156,171380756,171380739/XML".
biodb.TRACE[2024-05-18 16:07:38.807][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171381156,171380756,171380739/XML).
biodb.TRACE[2024-05-18 16:07:38.967][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171381156.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380756.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380739.xml"
biodb.DEBUG[2024-05-18 16:07:39.418][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:39.420][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:07:39.422][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:39.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:39.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:39.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:39.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:39.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:39.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:39.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:39.443][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:39.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:39.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.447][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:39.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.453][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.455][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.457][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.464][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.465][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.468][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.475][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.476][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.478][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.485][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.487][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.489][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.496][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.497][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.499][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.506][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:39.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:39.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.510][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.512][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:39.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:39.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.517][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:39.518][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:39.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.521][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:39.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:39.529][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:39.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.531][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:39.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:39.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.538][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:39.539][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:39.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.542][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:39.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:39.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.549][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:39.550][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:39.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.552][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.554][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:39.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:39.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.559][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:39.560][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:39.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.563][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:39.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:39.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.570][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:39.571][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:39.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.573][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:39.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:39.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.580][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:39.581][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:39.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.584][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:39.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:39.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.591][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:39.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.606][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:39.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.621][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:39.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.636][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.662][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:39.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:39.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:39.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:39.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:39.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:39.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:39.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:39.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:39.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:39.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:39.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:39.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:39.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:39.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:39.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:39.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:39.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:39.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:39.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:39.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:39.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:39.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:39.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:39.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:39.746][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:39.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:39.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.749][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:39.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:39.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.756][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.758][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.767][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.768][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.771][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.778][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.779][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.781][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.788][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.789][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.792][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.799][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.800][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.802][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.809][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:39.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:39.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.813][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.815][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:39.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:39.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.820][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:39.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:39.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.823][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:39.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:39.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:39.832][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:39.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.835][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:39.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:39.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.845][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:39.846][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:39.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.849][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:39.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:39.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.856][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:39.857][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:39.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.860][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.861][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:39.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:39.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.866][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:39.868][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:39.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.870][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:39.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:39.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.878][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:39.879][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:39.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.882][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:39.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:39.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.889][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:39.891][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:39.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.893][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:39.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:39.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.901][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:39.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:39.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.925][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:39.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:39.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.941][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:39.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:39.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.956][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:39.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:39.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.971][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:39.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:39.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:39.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:39.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:39.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:39.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:39.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:39.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:39.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:39.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:40.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:40.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:40.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:40.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:40.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:40.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:40.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:40.043][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.047][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.054][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:40.055][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:40.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.058][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:40.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:40.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.065][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:40.066][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:40.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.068][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:40.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:40.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.075][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:40.077][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:40.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.079][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:40.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:40.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.086][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:40.088][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:40.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.091][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:40.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:40.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.098][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:40.099][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:40.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.101][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:40.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:40.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.115][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:40.117][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:40.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.120][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.122][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:40.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:40.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.127][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:40.129][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:40.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.131][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:40.140][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:40.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.142][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:40.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:40.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.149][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:40.151][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:40.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.153][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:40.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:40.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.160][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:40.161][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:40.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.164][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.165][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:40.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:40.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.171][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:40.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:40.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.175][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:40.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.181][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:40.183][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:40.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.186][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:40.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:40.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.193][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:40.194][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:40.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.196][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:40.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:40.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.203][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:40.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:40.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:40.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:40.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:40.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:40.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.221][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:40.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:40.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:40.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:40.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:40.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.237][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:40.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:40.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:40.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:40.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:40.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:40.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.253][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:40.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:40.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:40.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:40.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:40.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.268][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:40.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:40.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:40.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:40.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:40.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:40.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:40.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:40.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:40.379][self$createEntryFromContent] Accession numbers: 171381156, 171380756, 171380739.
biodb.DEBUG[2024-05-18 16:07:40.381][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:40.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:40.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:40.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:40.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:40.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:40.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:40.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:40.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.408][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:40.409][private$selectFields]
biodb.TRACE[2024-05-18 16:07:40.410][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:40.412][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:40.413][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:40.414][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.415][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.418][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.419][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.423][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.425][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:40.427][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:40.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.434][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.436][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:40.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.452][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381156].
biodb.DEBUG[2024-05-18 16:07:40.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:40.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:40.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:40.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:40.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:40.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:40.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:40.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.478][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:40.479][private$selectFields]
biodb.TRACE[2024-05-18 16:07:40.481][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:40.483][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:40.484][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:40.485][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.487][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.489][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.490][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.492][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.494][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.495][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:40.496][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:40.498][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.499][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.501][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.502][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:40.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-05-18 16:07:40.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:40.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:40.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:40.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:40.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:40.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:40.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:40.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.545][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:40.546][private$selectFields]
biodb.TRACE[2024-05-18 16:07:40.548][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:40.549][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:40.550][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:40.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.553][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.555][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.568][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.569][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:40.570][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:40.572][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.573][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.576][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.577][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:40.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:40.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:40.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:40.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380739].
biodb.DEBUG[2024-05-18 16:07:40.596][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:40.597][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:40.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:40.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:40.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:40.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:40.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:40.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:40.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:40.621][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:40.624][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:40.626][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:40.628][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:40.680][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:40.681][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:40.683][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:40.685][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:40.739][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:40.741][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-05-18 16:07:40.747][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-05-18 16:07:40.751][private$loadEntries] Creating entries from ids [3]: "171382334, 171380845, 171377837".
biodb.DEBUG[2024-05-18 16:07:40.754][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:07:40.757][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171382334, 171380845, 171377837".
biodb.TRACE[2024-05-18 16:07:40.760][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:07:40.763][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:40.765][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:40.768][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:40.770][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:40.772][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:40.774][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:07:40.779][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171382334,171380845,171377837/XML".
biodb.DEBUG[2024-05-18 16:07:40.783][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:40.786][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:40.789][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171382334,171380845,171377837/XML".
biodb.TRACE[2024-05-18 16:07:40.877][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171382334,171380845,171377837/XML).
biodb.TRACE[2024-05-18 16:07:40.990][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171382334.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380845.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171377837.xml"
biodb.DEBUG[2024-05-18 16:07:40.997][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:41.000][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:07:41.003][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:41.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:41.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:41.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:41.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:41.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:41.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:41.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:41.034][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.037][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.041][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.053][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.055][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.059][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.071][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.073][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.077][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.089][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.091][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.096][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.107][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.110][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.114][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.126][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.129][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.133][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.145][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:41.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:41.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.155][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:41.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:41.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.164][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:41.166][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:41.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.170][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:41.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:41.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.183][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:41.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:41.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.190][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:41.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.202][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:41.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:41.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.209][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:41.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:41.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.222][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:41.224][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:41.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.229][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.232][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:41.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:41.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.241][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:41.243][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:41.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.248][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:41.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:41.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.260][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:41.263][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:41.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.267][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:41.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:41.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.279][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:41.282][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:41.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.286][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:41.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.298][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:41.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.342][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:41.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:41.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:41.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:41.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:41.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:41.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:41.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:41.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:41.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:41.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:41.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:41.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:41.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:41.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:41.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:41.444][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.446][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.448][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.455][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.464][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.469][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.476][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.478][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.480][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.487][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.489][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.491][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.498][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.499][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.502][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.509][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.510][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.512][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.519][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:41.521][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:41.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.523][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.525][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:41.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:41.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.530][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:41.531][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:41.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.534][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:41.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:41.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.541][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:41.542][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:41.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.544][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:41.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.551][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:41.553][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:41.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.555][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:41.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:41.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.562][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:41.563][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:41.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.565][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.567][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:41.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:41.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.572][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:41.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:41.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.576][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:41.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:41.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.583][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:41.584][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:41.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.586][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:41.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:41.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.593][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:41.595][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:41.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.597][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:41.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:41.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.604][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:41.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.619][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:41.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.636][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:41.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.652][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:41.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:41.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:41.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:41.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:41.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:41.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:41.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:41.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:41.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:41.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:41.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:41.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:41.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:41.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:41.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:41.739][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.740][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.743][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:41.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:41.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.750][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.751][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.753][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.761][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.763][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.767][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:41.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.776][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.777][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.780][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.788][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.790][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.793][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.801][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.802][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.804][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.811][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:41.813][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:41.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.815][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.817][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:41.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:41.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.824][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:41.826][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:41.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.830][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:41.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:41.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.841][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:41.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:41.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.848][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:41.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:41.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:41.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:41.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.860][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:41.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:41.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.870][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:41.872][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:41.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.876][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:41.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:41.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.882][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:41.883][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:41.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.886][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:41.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:41.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.895][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:41.896][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:41.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.898][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:41.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:41.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.905][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:41.907][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:41.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.909][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:41.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:41.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.917][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:41.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:41.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.942][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:41.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:41.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:41.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:41.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.991][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:41.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:41.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:41.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:41.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:42.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:42.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:42.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.008][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:42.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:42.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:42.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:42.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:42.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:42.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:42.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:42.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:42.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:42.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:42.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:42.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:42.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:42.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:42.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:42.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:42.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:42.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:42.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:42.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:42.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:42.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:42.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:42.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:42.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:42.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:42.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:42.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:42.111][self$createEntryFromContent] Accession numbers: 171382334, 171380845, 171377837.
biodb.DEBUG[2024-05-18 16:07:42.113][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:42.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:42.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:42.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:42.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:42.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:42.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:42.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:42.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.140][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.141][private$selectFields]
biodb.TRACE[2024-05-18 16:07:42.142][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:42.143][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:42.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.149][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.151][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.152][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.154][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.156][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.157][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.162][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.163][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.179][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171382334].
biodb.DEBUG[2024-05-18 16:07:42.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:42.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:42.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:42.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:42.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:42.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:42.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:42.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.205][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.206][private$selectFields]
biodb.TRACE[2024-05-18 16:07:42.208][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:42.209][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:42.210][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.211][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.212][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.215][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.216][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.220][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.221][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.222][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.223][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.225][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.227][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.228][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:42.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.245][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380845].
biodb.DEBUG[2024-05-18 16:07:42.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:42.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:42.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:42.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:42.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:42.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:42.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:42.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.272][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.274][private$selectFields]
biodb.TRACE[2024-05-18 16:07:42.275][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:42.276][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:42.278][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.280][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.283][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.288][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.289][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.290][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.291][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.295][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.296][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:42.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171377837].
biodb.DEBUG[2024-05-18 16:07:42.314][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:42.315][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:42.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:42.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:42.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:42.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:42.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:42.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:42.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:42.367][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:42.371][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:42.373][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-05-18 16:07:42.374][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:42.377][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-05-18 16:07:42.380][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:42.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:42.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:42.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:42.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:42.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:42.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:42.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:42.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.421][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.422][private$selectFields]
biodb.TRACE[2024-05-18 16:07:42.424][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:42.425][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:42.426][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.427][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.429][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.431][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.432][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.434][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.436][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.438][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.439][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.444][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.446][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:42.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.463][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381459].
biodb.DEBUG[2024-05-18 16:07:42.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:42.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:42.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:42.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:42.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:42.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:42.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:42.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.493][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.495][private$selectFields]
biodb.TRACE[2024-05-18 16:07:42.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:42.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:42.499][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.501][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.502][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.504][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.506][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.507][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.510][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.512][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.514][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.516][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.520][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.521][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:42.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.538][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381203].
biodb.DEBUG[2024-05-18 16:07:42.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:42.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:42.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:42.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:42.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:42.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:42.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:42.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.576][private$selectFields]
biodb.TRACE[2024-05-18 16:07:42.578][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:42.579][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:42.580][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.583][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.585][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.588][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.590][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.591][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.593][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.594][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.595][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.598][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.599][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:42.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.617][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:07:42.618][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:42.619][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:42.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:42.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:42.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:42.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:42.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:42.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:42.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:42.643][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:42.647][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:42.649][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-05-18 16:07:42.651][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:42.654][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-05-18 16:07:42.657][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:42.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:42.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:42.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:42.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:42.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:42.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:42.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.687][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.688][private$selectFields]
biodb.TRACE[2024-05-18 16:07:42.690][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:42.691][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:42.692][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.695][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.698][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.699][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.703][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.704][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.706][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.711][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.712][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:42.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.730][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [21454935].
biodb.DEBUG[2024-05-18 16:07:42.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:42.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:42.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:42.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:42.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:42.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:42.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:42.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.765][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.766][private$selectFields]
biodb.TRACE[2024-05-18 16:07:42.767][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:42.769][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:42.770][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.771][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.773][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.775][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.777][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.778][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.781][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.783][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.789][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.790][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:42.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.808][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-05-18 16:07:42.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:42.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:42.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:42.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:42.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:42.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:42.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.836][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.837][private$selectFields]
biodb.TRACE[2024-05-18 16:07:42.839][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:42.840][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:42.841][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.843][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.844][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.847][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.848][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.850][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.852][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.854][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.855][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:42.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.858][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.861][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.863][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:42.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:42.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:42.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-05-18 16:07:42.894][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:42.895][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:42.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:42.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:42.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:42.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:42.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:42.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:42.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:42.968][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:42.973][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:42.974][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-18 16:07:42.976][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:42.979][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-18 16:07:42.981][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:42.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:42.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:42.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:42.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:42.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:43.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.013][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.015][private$selectFields]
biodb.TRACE[2024-05-18 16:07:43.016][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:43.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:43.018][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.020][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.021][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.023][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.025][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.026][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.029][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.030][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.031][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.032][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.034][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.036][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.037][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:43.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-05-18 16:07:43.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:43.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:43.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:43.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:43.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:43.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.088][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.090][private$selectFields]
biodb.TRACE[2024-05-18 16:07:43.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:43.093][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:43.095][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.096][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.100][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.102][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.105][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.106][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.107][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.110][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.112][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.113][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:43.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.130][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:07:43.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:43.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:43.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:43.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:43.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:43.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.156][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.157][private$selectFields]
biodb.TRACE[2024-05-18 16:07:43.159][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:43.160][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:43.161][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.162][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.164][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.166][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.167][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.168][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.171][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.172][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.173][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.175][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.176][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.179][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:43.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.196][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171375796].
biodb.DEBUG[2024-05-18 16:07:43.197][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:43.198][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:43.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:43.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:43.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:43.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:43.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:43.221][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:43.225][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:43.227][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-18 16:07:43.228][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:43.231][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-18 16:07:43.233][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:43.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:43.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:43.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:43.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:43.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:43.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.261][private$selectFields]
biodb.TRACE[2024-05-18 16:07:43.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:43.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:43.264][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.267][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.269][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.274][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.276][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.277][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.282][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.283][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:43.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171368245].
biodb.DEBUG[2024-05-18 16:07:43.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:43.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:43.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:43.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:43.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:43.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.327][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.328][private$selectFields]
biodb.TRACE[2024-05-18 16:07:43.329][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:43.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:43.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.335][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.337][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.338][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.342][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.343][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.345][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.346][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.347][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.350][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.352][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:43.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.404][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367693].
biodb.DEBUG[2024-05-18 16:07:43.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:43.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:43.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:43.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:43.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:43.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.437][private$selectFields]
biodb.TRACE[2024-05-18 16:07:43.438][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:43.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:43.442][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.445][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.451][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.453][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.454][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.457][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.458][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.459][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.463][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.467][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.469][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:43.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.491][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171367665].
biodb.DEBUG[2024-05-18 16:07:43.493][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:43.494][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:43.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:43.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:43.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:43.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:43.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:43.560][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:43.566][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:43.569][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-05-18 16:07:43.572][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:43.575][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-05-18 16:07:43.577][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:43.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:43.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:43.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:43.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:43.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:43.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.611][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.612][private$selectFields]
biodb.TRACE[2024-05-18 16:07:43.613][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:43.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:43.616][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.617][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.618][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.621][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.623][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.626][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.627][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.628][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.629][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.631][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.633][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.635][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:43.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.662][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381156].
biodb.DEBUG[2024-05-18 16:07:43.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:43.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:43.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:43.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:43.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:43.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.693][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.694][private$selectFields]
biodb.TRACE[2024-05-18 16:07:43.696][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:43.697][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:43.698][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.699][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.701][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.705][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.708][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.709][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.711][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.713][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.714][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.719][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.720][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:43.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.738][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-05-18 16:07:43.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:43.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:43.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:43.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:43.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:43.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.768][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.769][private$selectFields]
biodb.TRACE[2024-05-18 16:07:43.770][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:43.771][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:43.772][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.777][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.779][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.780][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.784][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.786][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.788][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.793][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.795][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:43.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380739].
biodb.DEBUG[2024-05-18 16:07:43.813][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:43.815][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:43.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:43.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:43.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:43.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:43.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:43.847][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:43.854][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:43.857][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-05-18 16:07:43.858][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:43.866][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-05-18 16:07:43.869][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:43.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:43.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:43.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:43.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:43.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:43.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.896][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.897][private$selectFields]
biodb.TRACE[2024-05-18 16:07:43.898][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:43.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:43.901][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.903][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.906][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.912][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.913][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.915][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.916][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.920][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.922][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:43.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.949][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171382334].
biodb.DEBUG[2024-05-18 16:07:43.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:43.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:43.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:43.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:43.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:43.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:43.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:43.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.977][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.978][private$selectFields]
biodb.TRACE[2024-05-18 16:07:43.979][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:43.980][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:43.981][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.984][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.987][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.988][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:43.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:43.992][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:43.994][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.997][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:43.999][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.004][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.005][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:44.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.023][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380845].
biodb.DEBUG[2024-05-18 16:07:44.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:44.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:44.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:44.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:44.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:44.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:44.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:44.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.053][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:44.055][private$selectFields]
biodb.TRACE[2024-05-18 16:07:44.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:44.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:44.061][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:44.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.065][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.068][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.069][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.070][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.073][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:44.075][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:44.077][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.078][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.082][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:44.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.099][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171377837].
biodb.DEBUG[2024-05-18 16:07:44.100][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:44.101][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:07:44.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:44.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:44.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:44.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:44.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:44.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:44.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:44.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:44.197][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:44.203][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:44.205][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:44.207][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:44.263][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:44.265][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:44.267][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:44.269][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:44.326][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:44.328][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-05-18 16:07:44.334][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-05-18 16:07:44.338][private$loadEntries] Creating entries from ids [1]: "171379913".
biodb.DEBUG[2024-05-18 16:07:44.339][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:07:44.341][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171379913".
biodb.TRACE[2024-05-18 16:07:44.343][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:07:44.345][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:44.346][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:44.348][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:44.349][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:44.350][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:44.352][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-18 16:07:44.354][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171379913/XML".
biodb.DEBUG[2024-05-18 16:07:44.357][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:44.358][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:44.360][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171379913/XML".
biodb.TRACE[2024-05-18 16:07:44.496][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171379913/XML).
biodb.TRACE[2024-05-18 16:07:44.601][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171379913.xml"
biodb.DEBUG[2024-05-18 16:07:44.604][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:44.606][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:07:44.608][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:44.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:44.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:44.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:44.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:44.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:44.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:44.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:44.633][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:44.635][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:44.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.637][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:44.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:44.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.648][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:44.650][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:44.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.654][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:44.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:44.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.661][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:44.663][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:44.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.666][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:44.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:44.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.674][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:44.675][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:44.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.677][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:44.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:44.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.684][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:44.686][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:44.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.688][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:44.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:44.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.695][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:44.696][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:44.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.699][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:44.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:44.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.706][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:44.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.709][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.711][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:44.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:44.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.719][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:44.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:44.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.725][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.727][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:44.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:44.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.734][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:44.735][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:44.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.738][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:44.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:44.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:44.746][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:44.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.748][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:44.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:44.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.756][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:44.759][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:44.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.763][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.765][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:44.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:44.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.771][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:44.774][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:44.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.793][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:44.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:44.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.803][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:44.805][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:44.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.808][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:44.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:44.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.819][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:44.821][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:44.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.823][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:44.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:44.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.830][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:44.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:44.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:44.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:44.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:44.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.850][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:44.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:44.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:44.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:44.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.875][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:44.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:44.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:44.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:44.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:44.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:44.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:44.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:44.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:44.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:44.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:44.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.923][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:44.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:44.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:44.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:44.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:44.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:44.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:44.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:44.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:44.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:44.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:44.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:44.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:44.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:44.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:44.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:44.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:44.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:44.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:44.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:44.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:44.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:45.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:45.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:45.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:45.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:45.013][self$createEntryFromContent] Accession numbers: 171379913.
biodb.DEBUG[2024-05-18 16:07:45.015][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:45.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:45.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:45.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:45.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:45.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:45.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:45.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:45.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.057][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:45.059][private$selectFields]
biodb.TRACE[2024-05-18 16:07:45.061][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:45.063][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:45.065][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:45.068][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.070][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.073][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.079][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.081][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:45.083][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:45.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.091][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.092][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:45.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.110][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381459].
biodb.DEBUG[2024-05-18 16:07:45.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:45.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:45.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:45.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:45.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:45.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:45.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:45.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.139][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:45.140][private$selectFields]
biodb.TRACE[2024-05-18 16:07:45.142][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:45.143][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:45.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:45.145][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.149][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.150][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.152][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.154][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.155][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:45.157][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:45.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.163][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.165][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:45.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.188][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381203].
biodb.DEBUG[2024-05-18 16:07:45.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:45.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:45.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:45.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:45.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:45.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:45.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:45.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:45.229][private$selectFields]
biodb.TRACE[2024-05-18 16:07:45.230][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:45.231][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:45.233][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:45.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.238][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.240][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.243][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.244][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:45.245][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:45.246][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.248][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.250][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.251][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:45.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:45.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.268][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171379913].
biodb.DEBUG[2024-05-18 16:07:45.270][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:45.271][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:45.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:45.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:45.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:45.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:45.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:45.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:45.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:45.294][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:45.298][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:45.300][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:45.302][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:45.358][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:45.360][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:45.362][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:45.364][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:45.415][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:45.418][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-05-18 16:07:45.423][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-05-18 16:07:45.427][private$loadEntries] Creating entries from ids [3]: "171374855, 171374844, 12196694".
biodb.DEBUG[2024-05-18 16:07:45.428][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-18 16:07:45.430][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171374855, 171374844, 12196694".
biodb.TRACE[2024-05-18 16:07:45.432][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-18 16:07:45.434][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:45.435][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:45.444][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:45.447][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:45.448][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:45.449][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-18 16:07:45.452][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374855,171374844,12196694/XML".
biodb.DEBUG[2024-05-18 16:07:45.455][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:45.456][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:45.458][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374855,171374844,12196694/XML".
biodb.TRACE[2024-05-18 16:07:45.589][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374855,171374844,12196694/XML).
biodb.TRACE[2024-05-18 16:07:45.692][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374855.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374844.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/12196694.xml"
biodb.DEBUG[2024-05-18 16:07:45.698][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:45.700][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-18 16:07:45.702][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:45.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:45.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:45.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:45.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:45.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:45.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:45.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:45.727][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:45.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:45.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.732][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:45.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:45.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.740][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:45.743][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:45.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.747][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:45.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:45.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.755][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:45.757][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:45.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:45.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.768][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:45.770][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:45.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.774][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:45.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.786][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:45.789][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:45.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.793][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:45.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.805][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:45.807][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:45.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.811][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:45.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.818][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:45.820][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:45.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.822][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.824][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:45.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:45.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.829][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:45.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:45.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.833][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:45.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:45.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:45.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.843][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:45.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:45.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:45.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:45.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.854][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:45.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:45.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.865][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:45.867][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:45.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.869][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.872][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:45.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:45.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.880][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:45.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:45.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.885][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:45.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:45.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.892][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:45.893][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:45.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.896][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:45.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:45.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.903][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:45.906][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:45.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.910][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:45.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:45.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.920][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:45.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:45.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:45.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:45.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:45.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:45.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.938][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:45.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:45.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:45.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:45.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:45.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:45.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.955][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:45.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:45.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:45.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:45.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:45.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.978][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:45.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:45.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:45.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:45.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:45.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:45.995][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:45.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:45.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:46.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:46.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:46.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:46.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:46.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:46.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:46.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:46.089][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.095][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.104][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.106][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.109][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.116][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.118][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.120][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.128][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.129][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.132][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.139][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.141][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.145][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.155][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.156][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.159][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.167][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:46.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:46.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.171][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.172][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:46.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.178][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:46.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:46.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.185][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:46.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.196][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:46.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:46.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:46.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:46.211][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:46.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.221][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:46.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:46.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.231][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:46.233][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:46.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.235][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.237][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:46.238][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:46.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.241][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:46.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:46.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.248][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:46.250][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:46.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:46.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:46.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.261][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:46.263][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:46.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.267][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:46.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:46.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.275][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:46.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.292][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.307][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:46.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.323][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:46.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:46.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:46.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:46.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:46.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:46.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:46.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:46.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:46.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:46.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:46.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:46.426][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.432][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.442][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.443][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.446][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.453][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.454][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.456][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.463][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.465][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.467][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.474][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.475][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.477][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.484][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.485][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.488][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.495][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:46.496][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:46.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.499][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.500][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:46.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:46.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.506][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:46.507][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:46.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.509][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:46.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.516][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:46.517][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:46.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.520][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:46.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:46.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:46.528][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:46.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.530][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:46.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:46.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.537][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:46.538][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:46.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.541][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.548][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:46.549][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:46.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.554][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:46.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.562][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:46.563][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:46.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.566][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:46.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:46.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.572][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:46.573][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:46.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.576][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:46.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:46.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.583][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:46.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:46.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.598][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:46.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:46.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.617][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:46.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:46.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.632][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:46.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:46.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.651][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:46.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:46.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:46.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:46.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:46.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:46.763][self$createEntryFromContent] Accession numbers: 171374855, 171374844, 12196694.
biodb.DEBUG[2024-05-18 16:07:46.764][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:46.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:46.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:46.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:46.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:46.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:46.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:46.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:46.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.791][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:46.792][private$selectFields]
biodb.TRACE[2024-05-18 16:07:46.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:46.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:46.795][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:46.797][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.798][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.800][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.802][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.805][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.806][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:46.808][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:46.809][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.813][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.814][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:46.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374855].
biodb.DEBUG[2024-05-18 16:07:46.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:46.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:46.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:46.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:46.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:46.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:46.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:46.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.856][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:46.857][private$selectFields]
biodb.TRACE[2024-05-18 16:07:46.859][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:46.860][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:46.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:46.862][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.866][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.869][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.871][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.872][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:46.873][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:46.875][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.876][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.878][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.879][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:46.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.897][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374844].
biodb.DEBUG[2024-05-18 16:07:46.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:46.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:46.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:46.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:46.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:46.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:46.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.923][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:46.924][private$selectFields]
biodb.TRACE[2024-05-18 16:07:46.925][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:46.926][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:46.927][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:46.929][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.930][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.932][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.933][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.937][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.938][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:46.940][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:46.941][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.942][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.944][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.946][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:46.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:46.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:46.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:46.962][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [12196694].
biodb.DEBUG[2024-05-18 16:07:46.964][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:46.965][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:46.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:46.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:46.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:47.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:47.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:47.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:47.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:47.016][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:47.020][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:47.022][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-18 16:07:47.024][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:47.026][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-18 16:07:47.029][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:47.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:47.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:47.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:47.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:47.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:47.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:47.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:47.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.056][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.057][private$selectFields]
biodb.TRACE[2024-05-18 16:07:47.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:47.060][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:47.061][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.062][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.063][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.066][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.067][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.068][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.071][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.072][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.073][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.078][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.079][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:47.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.099][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:07:47.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:47.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:47.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:47.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:47.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:47.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:47.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:47.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.133][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.134][private$selectFields]
biodb.TRACE[2024-05-18 16:07:47.135][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:47.136][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:47.145][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.148][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.150][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.154][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.158][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.160][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.163][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.170][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.172][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:47.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-05-18 16:07:47.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:47.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:47.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:47.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:47.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:47.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:47.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:47.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.217][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.219][private$selectFields]
biodb.TRACE[2024-05-18 16:07:47.221][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:47.223][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:47.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.227][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.233][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.237][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.241][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.243][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.245][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.247][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.254][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.256][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:47.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.274][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372572].
biodb.DEBUG[2024-05-18 16:07:47.275][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:47.277][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:47.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:47.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:47.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:47.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:47.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:47.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:47.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:47.300][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:47.303][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:47.305][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-18 16:07:47.307][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:47.309][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-18 16:07:47.311][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:47.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:47.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:47.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:47.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:47.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:47.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:47.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:47.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.344][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.345][private$selectFields]
biodb.TRACE[2024-05-18 16:07:47.346][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:47.348][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:47.349][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.350][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.351][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.354][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.355][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.359][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.361][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.366][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.368][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:47.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.388][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-05-18 16:07:47.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:47.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:47.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:47.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:47.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:47.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:47.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:47.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.423][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.424][private$selectFields]
biodb.TRACE[2024-05-18 16:07:47.425][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:47.426][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:47.427][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.432][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.433][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.435][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.437][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.438][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.440][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.445][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.446][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:47.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.467][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-05-18 16:07:47.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:47.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:47.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:47.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:47.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:47.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:47.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:47.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.497][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.499][private$selectFields]
biodb.TRACE[2024-05-18 16:07:47.500][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:47.501][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:47.502][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.503][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.506][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.510][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.511][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.513][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.515][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.518][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.519][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.520][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.523][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.525][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.545][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171369134].
biodb.DEBUG[2024-05-18 16:07:47.547][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:47.548][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:47.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:47.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:47.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:47.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:47.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:47.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:47.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:47.608][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:47.612][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:47.613][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:47.616][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:47.671][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:47.673][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:47.676][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:47.679][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:47.735][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:47.740][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-05-18 16:07:47.747][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-05-18 16:07:47.752][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:47.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:47.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:47.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:47.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:47.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:47.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:47.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:47.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.793][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.795][private$selectFields]
biodb.TRACE[2024-05-18 16:07:47.796][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:47.797][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:47.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.804][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.806][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.810][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.811][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.812][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.814][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.815][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.818][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.819][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:47.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.838][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381156].
biodb.DEBUG[2024-05-18 16:07:47.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:47.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:47.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:47.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:47.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:47.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:47.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.868][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.869][private$selectFields]
biodb.TRACE[2024-05-18 16:07:47.871][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:47.872][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:47.873][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.874][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.876][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.878][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.880][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.881][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.883][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.885][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.887][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.888][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.890][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.892][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.893][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:47.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.915][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-05-18 16:07:47.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:47.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:47.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:47.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:47.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:47.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:47.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:47.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.942][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.943][private$selectFields]
biodb.TRACE[2024-05-18 16:07:47.945][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:47.947][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:47.949][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.951][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.962][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.966][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.968][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.970][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:47.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.975][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.979][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.980][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:47.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:47.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:47.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:47.998][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380739].
biodb.DEBUG[2024-05-18 16:07:48.000][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:48.001][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:48.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:48.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:48.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:48.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:48.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:48.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:48.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:48.029][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:48.033][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:48.034][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:48.037][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-18 16:07:48.100][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-18 16:07:48.101][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-18 16:07:48.103][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-18 16:07:48.105][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-18 16:07:48.190][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-18 16:07:48.193][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-05-18 16:07:48.198][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-05-18 16:07:48.203][private$loadEntries] Creating entries from ids [1]: "171382340".
biodb.DEBUG[2024-05-18 16:07:48.205][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:07:48.208][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171382340".
biodb.TRACE[2024-05-18 16:07:48.212][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:07:48.214][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:07:48.217][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:07:48.219][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:07:48.221][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:07:48.222][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:07:48.224][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-18 16:07:48.226][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171382340/XML".
biodb.DEBUG[2024-05-18 16:07:48.229][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:07:48.230][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:07:48.232][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171382340/XML".
biodb.TRACE[2024-05-18 16:07:48.355][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171382340/XML).
biodb.TRACE[2024-05-18 16:07:48.460][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171382340.xml"
biodb.DEBUG[2024-05-18 16:07:48.465][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:07:48.467][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:07:48.470][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-18 16:07:48.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:48.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:48.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:48.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:48.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:48.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:48.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:48.492][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:48.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:48.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.496][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:48.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:48.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.503][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:48.504][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:48.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.506][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:48.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:48.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.513][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:48.515][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:48.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.517][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:48.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:48.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.524][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:48.526][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:48.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.530][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:48.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:48.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.540][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:48.542][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:48.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.546][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:48.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:48.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.558][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:48.559][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:48.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.561][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:48.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.568][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:48.570][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:48.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.572][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.575][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-18 16:07:48.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:48.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.583][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:48.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:48.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.589][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:48.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:48.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.598][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:48.600][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:48.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.602][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:48.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:48.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.611][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:48.612][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:48.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.615][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:48.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:48.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.622][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:48.623][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:48.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.626][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.627][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:48.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:48.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.631][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-18 16:07:48.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:48.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.639][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:48.640][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:48.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.642][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:48.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:48.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.649][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:48.651][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:48.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.662][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:48.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:48.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.670][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-18 16:07:48.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:48.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:48.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:48.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:48.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:48.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.686][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-18 16:07:48.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:48.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:48.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:48.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:48.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:48.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.707][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-18 16:07:48.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:48.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:48.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:48.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:48.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:48.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.730][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-18 16:07:48.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:48.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:48.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:48.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:48.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:48.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.747][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-18 16:07:48.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:48.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:48.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:48.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:48.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:48.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:48.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:48.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:48.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:48.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:48.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:48.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:48.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:48.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:48.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:48.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:48.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:48.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:48.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:48.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:48.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:48.830][self$createEntryFromContent] Accession numbers: 171382340.
biodb.DEBUG[2024-05-18 16:07:48.831][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:48.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:48.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:48.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:48.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:48.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:48.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:48.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:48.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.862][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:48.863][private$selectFields]
biodb.TRACE[2024-05-18 16:07:48.864][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:48.865][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:48.867][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:48.868][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.870][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.876][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.878][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.880][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.881][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:48.883][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:48.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.885][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.889][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.890][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:48.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.912][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171382340].
biodb.DEBUG[2024-05-18 16:07:48.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:48.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:48.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:48.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:48.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:48.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:48.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:48.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.943][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:48.945][private$selectFields]
biodb.TRACE[2024-05-18 16:07:48.946][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:48.947][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:48.948][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:48.950][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.951][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.953][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.960][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.962][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:48.963][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:48.964][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.968][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.970][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:48.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:48.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:48.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:48.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171382334].
biodb.DEBUG[2024-05-18 16:07:48.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:48.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:48.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:49.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:49.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:49.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:49.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:49.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.030][private$selectFields]
biodb.TRACE[2024-05-18 16:07:49.031][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:49.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:49.035][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.037][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.040][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.044][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.046][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.048][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.052][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.054][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.056][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.057][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.059][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.061][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.062][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:49.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.079][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380845].
biodb.DEBUG[2024-05-18 16:07:49.080][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:49.082][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:49.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:49.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:49.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:49.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:49.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:49.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:49.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:49.152][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:49.158][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:49.160][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-05-18 16:07:49.163][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:49.167][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-05-18 16:07:49.170][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:49.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:49.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:49.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:49.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:49.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:49.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:49.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:49.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.230][private$selectFields]
biodb.TRACE[2024-05-18 16:07:49.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:49.234][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:49.236][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.238][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.241][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.245][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.247][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.249][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.254][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.256][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.258][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.260][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.266][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.268][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:49.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.296][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381459].
biodb.DEBUG[2024-05-18 16:07:49.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:49.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:49.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:49.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:49.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:49.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:49.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:49.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.338][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.340][private$selectFields]
biodb.TRACE[2024-05-18 16:07:49.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:49.344][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:49.346][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.354][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.358][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.362][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.364][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.366][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.368][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.370][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.373][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.375][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:49.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.392][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381203].
biodb.DEBUG[2024-05-18 16:07:49.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:49.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:49.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:49.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:49.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:49.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:49.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:49.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.424][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.426][private$selectFields]
biodb.TRACE[2024-05-18 16:07:49.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:49.428][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:49.429][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.434][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.436][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.437][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.439][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.441][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.442][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.443][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.445][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.447][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.449][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:49.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.466][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171379913].
biodb.DEBUG[2024-05-18 16:07:49.467][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:49.469][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:49.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:49.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:49.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:49.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:49.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:49.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:49.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:49.497][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:49.503][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:49.506][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-05-18 16:07:49.509][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:49.512][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-05-18 16:07:49.515][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:49.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:49.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:49.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:49.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:49.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:49.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:49.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:49.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.543][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.544][private$selectFields]
biodb.TRACE[2024-05-18 16:07:49.545][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:49.546][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:49.548][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.549][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.551][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.554][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.561][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.563][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.565][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.566][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.567][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.570][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.571][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:49.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.588][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374855].
biodb.DEBUG[2024-05-18 16:07:49.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:49.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:49.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:49.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:49.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:49.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:49.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:49.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.627][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.628][private$selectFields]
biodb.TRACE[2024-05-18 16:07:49.630][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:49.631][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:49.632][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.635][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.638][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.639][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.643][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.645][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.647][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.648][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.653][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.655][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:49.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.678][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374844].
biodb.DEBUG[2024-05-18 16:07:49.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:49.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:49.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:49.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:49.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:49.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:49.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:49.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.706][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.708][private$selectFields]
biodb.TRACE[2024-05-18 16:07:49.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:49.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:49.711][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.717][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.720][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.723][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.725][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:49.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.728][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.730][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.732][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:49.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:49.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:49.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:49.752][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [12196694].
biodb.DEBUG[2024-05-18 16:07:49.753][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:49.754][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:49.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:49.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:49.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:49.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:49.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:49.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:49.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:49.821][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:49.825][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:49.827][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-18 16:07:49.829][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:50.021][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-18 16:07:50.025][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:50.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:50.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.065][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.066][private$selectFields]
biodb.TRACE[2024-05-18 16:07:50.067][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:50.068][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:50.069][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.071][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.072][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.074][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.076][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.081][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.083][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.088][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.089][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:50.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.106][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-05-18 16:07:50.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:50.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.132][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.133][private$selectFields]
biodb.TRACE[2024-05-18 16:07:50.135][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:50.136][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:50.137][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.142][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.143][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.144][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.147][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.148][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.149][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.151][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.152][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.154][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.156][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:50.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-05-18 16:07:50.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:50.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.199][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.201][private$selectFields]
biodb.TRACE[2024-05-18 16:07:50.202][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:50.203][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:50.204][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.206][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.207][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.209][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.211][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.212][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.214][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.216][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.217][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.218][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.220][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.222][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.223][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:50.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.240][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372572].
biodb.DEBUG[2024-05-18 16:07:50.242][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:50.243][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:50.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:50.267][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:50.273][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:50.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-18 16:07:50.278][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:50.280][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-18 16:07:50.282][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:50.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:50.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.310][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.311][private$selectFields]
biodb.TRACE[2024-05-18 16:07:50.313][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:50.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:50.315][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.318][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.320][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.321][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.323][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.325][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.326][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.327][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.329][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.330][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.332][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.334][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:50.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-05-18 16:07:50.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:50.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.378][private$selectFields]
biodb.TRACE[2024-05-18 16:07:50.380][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:50.381][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:50.382][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.383][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.385][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.387][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.388][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.390][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.392][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.394][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.396][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.397][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.399][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.401][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.418][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-05-18 16:07:50.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:50.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.453][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.455][private$selectFields]
biodb.TRACE[2024-05-18 16:07:50.456][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:50.457][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:50.459][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.460][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.461][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.464][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.467][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.469][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.470][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.472][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.473][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.474][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.477][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.478][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:50.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.495][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171369134].
biodb.DEBUG[2024-05-18 16:07:50.496][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:50.498][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:50.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:50.559][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:50.563][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:50.566][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-05-18 16:07:50.569][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:50.572][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-05-18 16:07:50.575][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:50.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:50.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.603][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.604][private$selectFields]
biodb.TRACE[2024-05-18 16:07:50.605][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:50.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:50.608][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.609][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.610][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.613][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.618][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.619][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.621][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.623][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.626][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.627][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:50.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171381156].
biodb.DEBUG[2024-05-18 16:07:50.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:50.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.681][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.683][private$selectFields]
biodb.TRACE[2024-05-18 16:07:50.685][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:50.686][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:50.688][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.689][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.690][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.693][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.696][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.699][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.701][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.702][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.705][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.707][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.708][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:50.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-05-18 16:07:50.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:50.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.753][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.755][private$selectFields]
biodb.TRACE[2024-05-18 16:07:50.756][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:50.757][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:50.758][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.759][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.761][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.763][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.764][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.768][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.770][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.771][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.772][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.779][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.781][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:50.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380739].
biodb.DEBUG[2024-05-18 16:07:50.808][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:50.810][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:50.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:50.845][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:50.848][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:50.850][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-05-18 16:07:50.852][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:50.855][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-05-18 16:07:50.857][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:50.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:50.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.894][private$selectFields]
biodb.TRACE[2024-05-18 16:07:50.896][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:50.898][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:50.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.908][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.913][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.917][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.920][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.922][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:50.924][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.933][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:50.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171382340].
biodb.DEBUG[2024-05-18 16:07:50.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:50.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:50.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:50.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:50.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:50.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:50.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:50.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:50.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:50.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:50.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:51.007][private$selectFields]
biodb.TRACE[2024-05-18 16:07:51.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:51.011][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:51.013][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:51.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.020][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.021][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.022][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.025][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.026][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:51.028][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:51.029][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.034][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.035][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:51.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171382334].
biodb.DEBUG[2024-05-18 16:07:51.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:51.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:51.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:51.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:51.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:51.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:51.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:51.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.083][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:51.085][private$selectFields]
biodb.TRACE[2024-05-18 16:07:51.087][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:51.089][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:51.091][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:51.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.095][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.099][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.107][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.108][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:51.110][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-18 16:07:51.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.112][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.115][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.116][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-18 16:07:51.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380845].
biodb.DEBUG[2024-05-18 16:07:51.142][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:51.144][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:07:51.187][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:51.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:51.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.196][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:51.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:07:51.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:07:51.213][biodb::testThat]
biodb.INFO [2024-05-18 16:07:51.214][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-05-18 16:07:51.216][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:07:51.217][biodb::testThat]
biodb.TRACE[2024-05-18 16:07:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:07:51.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:07:51.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.227][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-18 16:07:51.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-18 16:07:51.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:07:51.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:51.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:51.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:51.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:51.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:51.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:51.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:51.301][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:51.305][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:51.307][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-18 16:07:51.309][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:51.311][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-18 16:07:51.314][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:51.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:51.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:51.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:51.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:51.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:51.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:51.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:51.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:51.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:51.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:51.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:51.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:51.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:51.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:51.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:51.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:51.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:51.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:51.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:51.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:51.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:51.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:51.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:51.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:51.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:51.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:51.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.449][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:51.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:51.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:51.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:51.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:51.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:51.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:51.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:51.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:51.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:51.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:51.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:51.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:51.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:51.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:51.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:51.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:51.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.564][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:51.566][private$selectFields]
biodb.TRACE[2024-05-18 16:07:51.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:51.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:51.569][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:51.571][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:51.572][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:51.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.575][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.576][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.578][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.580][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.583][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.584][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.587][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.588][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.590][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.592][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.594][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.595][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.598][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.599][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:51.600][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:51.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.603][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.604][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:51.606][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:51.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.608][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.609][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:51.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:51.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.613][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:51.616][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:51.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.618][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.620][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:51.621][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:51.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.624][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.625][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.627][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.653][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.655][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:51.656][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:51.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.659][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.660][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:51.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:51.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.664][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.666][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.670][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.671][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:51.672][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:51.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.675][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.677][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:51.680][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:51.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.684][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.686][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:51.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:51.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.692][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.695][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.697][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.701][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.703][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.706][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.710][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.712][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.714][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.718][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.721][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.723][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.728][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.730][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:51.731][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:51.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.734][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.735][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:51.736][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:51.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.739][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.740][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:51.742][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:51.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.744][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:51.747][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:51.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.751][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.753][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:51.754][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:51.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.757][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.758][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.760][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.762][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:51.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:51.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.769][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.771][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:51.773][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:51.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.777][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.779][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.785][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.787][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:51.788][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:51.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.791][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.792][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:51.794][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:51.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.798][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:51.799][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:51.800][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:51.802][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:51.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.804][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.805][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.807][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.809][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.811][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.812][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.815][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.816][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.817][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.820][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.821][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.823][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.825][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.827][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:51.828][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:51.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.830][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.832][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:51.833][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:51.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.836][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:51.839][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:51.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.843][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.845][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:51.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:51.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.851][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.854][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:51.856][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:51.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.860][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.862][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:51.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.866][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.867][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:51.869][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:51.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.871][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.873][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:51.874][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:51.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.876][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.878][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.879][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:51.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.882][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.883][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:51.885][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:51.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.887][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.888][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:51.890][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:51.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.892][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.894][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:07:51.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:51.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:51.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:51.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:51.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:51.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:51.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:51.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:51.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:52.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:52.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:52.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:52.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:52.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:52.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:52.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:52.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:52.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:52.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:52.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.087][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:52.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:52.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.093][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:52.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.099][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:52.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:52.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:52.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:52.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:52.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:52.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:52.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.195][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.211][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171380427, 2-(octanoyl(15N)amino)acetic acid, 2-(1-oxooctyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)(1,2-13C2)ethanoic acid, ...].
biodb.DEBUG[2024-05-18 16:07:52.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:52.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:52.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:52.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:52.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:52.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:52.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:52.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:52.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:52.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:52.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:52.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:52.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:52.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:52.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:52.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:52.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.406][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:52.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:52.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.411][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:52.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:52.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:52.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:52.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:52.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:52.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.493][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:52.495][private$selectFields]
biodb.TRACE[2024-05-18 16:07:52.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:52.499][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:52.500][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:52.502][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:52.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:52.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.506][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.507][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.508][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.511][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.512][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.513][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.516][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.517][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.518][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.521][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.522][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.523][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.526][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.527][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.529][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.532][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.534][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:52.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:52.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.540][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.542][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:52.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:52.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.548][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.553][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.554][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:52.555][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:52.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.558][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.559][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.560][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.563][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.564][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.565][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.569][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.571][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:52.573][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:52.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.577][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.578][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.579][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.582][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.583][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.584][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.587][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.588][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.589][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.592][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.593][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:52.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:52.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.597][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.598][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.599][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.602][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.603][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.604][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.607][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.608][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.609][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.612][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.613][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.615][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.617][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.626][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.628][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.631][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.632][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:52.633][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:52.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.636][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.637][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:52.638][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:52.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.641][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.648][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.650][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:52.653][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:52.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.656][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.657][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.658][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.661][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.662][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.664][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.666][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.667][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:52.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:52.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.671][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.672][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.677][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.679][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.681][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.686][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.687][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.689][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.691][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.692][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:52.694][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:52.695][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:52.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:52.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.698][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.700][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.701][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.703][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.705][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.706][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.709][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.710][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.711][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.714][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.715][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.718][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.724][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.726][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.729][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.731][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:52.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:52.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.738][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.739][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:52.740][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:52.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.743][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.748][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.752][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.754][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:52.756][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:52.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.762][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.767][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.769][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:52.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.772][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.774][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:52.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:52.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.780][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.782][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.784][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:52.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.786][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.788][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.790][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:52.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.794][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.796][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.798][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:52.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.801][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.802][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:07:52.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:52.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:52.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:52.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:52.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:52.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:52.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:52.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:52.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:52.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:52.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:52.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:52.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:52.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:52.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:52.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:52.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:52.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:52.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:52.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:52.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:52.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:52.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:52.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.962][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:52.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.970][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:52.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:52.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:52.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:52.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:52.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:52.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:52.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:53.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:53.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:53.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:53.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:53.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:53.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-05-18 16:07:53.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:53.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:53.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:53.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:53.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:53.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:53.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:53.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:53.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:53.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:53.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:53.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:53.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:53.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:53.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:53.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:53.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:53.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:53.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.272][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:53.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:53.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.278][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:53.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:53.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:53.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:53.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:53.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:53.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.354][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:53.355][private$selectFields]
biodb.TRACE[2024-05-18 16:07:53.357][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:53.358][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:53.359][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:53.360][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:53.362][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:53.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.364][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.366][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.368][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.373][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.375][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.377][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.379][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.380][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.382][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.384][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.386][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.387][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.391][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.393][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.395][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.396][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:53.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:53.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.400][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.401][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:53.403][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:53.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.405][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.406][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.410][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.411][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:53.413][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:53.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.415][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.416][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.417][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.420][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.426][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:53.427][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:53.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.430][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.435][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.436][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.437][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.439][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.441][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.442][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.444][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.445][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:53.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:53.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.449][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.450][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.452][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.454][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.455][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.457][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.459][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.460][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.462][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.466][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.468][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.470][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.474][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.475][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.476][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.479][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.480][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:53.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:53.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.484][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.485][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:53.486][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:53.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.489][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.494][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.495][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:53.496][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:53.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.499][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.500][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.503][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.507][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.509][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.511][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.514][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.515][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:53.516][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:53.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.519][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.524][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.525][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.526][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.528][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.530][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.531][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.535][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:53.536][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:53.537][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:53.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:53.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.541][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.542][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.543][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.545][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.547][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.548][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.550][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.552][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.553][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.555][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.556][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.558][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.560][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.561][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.563][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.565][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.566][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:53.567][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:53.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.570][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.571][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:53.572][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:53.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.575][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.579][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.581][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:53.582][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:53.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.584][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.586][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.589][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.590][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.592][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.594][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.595][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:53.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:53.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.599][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.600][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.602][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.604][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.606][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.619][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.624][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.626][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.628][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.632][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.634][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:07:53.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:53.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:53.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:53.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:53.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:53.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:53.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:53.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:53.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:53.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:53.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:53.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.761][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:53.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:53.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:53.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:53.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:53.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:53.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:53.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:53.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.797][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:53.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.802][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:53.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:53.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.807][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:53.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:53.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:53.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:53.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:53.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:53.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:53.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:53.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:53.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:53.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:53.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.910][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171375796, (Z)-2-cyano-3-phenyl-3-sulfanyl-prop-2-enamide, (Z)-2-cyano-3-mercapto-3-phenyl-2-propenamide, (Z)-2-cyano-3-phenyl-3-sulfanylprop-2-enamide, (Z)-2-cyano-3-phenyl-3-sulfanyl-prop-2-enamide, ...].
biodb.DEBUG[2024-05-18 16:07:53.912][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:53.913][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:53.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:53.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:53.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:53.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:53.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:53.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:53.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:53.937][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:53.940][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:53.942][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-18 16:07:53.944][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:53.946][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-18 16:07:53.948][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:53.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:53.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:53.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:53.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:53.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:53.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:53.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:53.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:53.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:53.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:53.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:53.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:53.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:53.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:53.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:54.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:54.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:54.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:54.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:54.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:54.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:54.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.063][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:54.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:54.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.068][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:54.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:54.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:54.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:54.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:54.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:54.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.134][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:54.136][private$selectFields]
biodb.TRACE[2024-05-18 16:07:54.137][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:54.138][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:54.139][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:54.140][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:54.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:54.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.144][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.145][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.147][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.149][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.150][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.152][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.154][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.155][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.156][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.159][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.160][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.161][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.164][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.165][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.166][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.168][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.170][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:54.171][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:54.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.173][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.174][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:54.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:54.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.179][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.181][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.183][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.184][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:54.186][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:54.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.188][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.189][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.193][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.194][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.195][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.198][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.199][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:54.200][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:54.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.203][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.209][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.211][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.213][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.218][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.220][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.222][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.224][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:54.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:54.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.227][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.229][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.230][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.232][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.234][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.235][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.237][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.239][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.240][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.242][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.244][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.245][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.247][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.249][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.250][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.253][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:54.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:54.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.257][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:54.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:54.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.262][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.267][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.268][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:54.270][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:54.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.272][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.273][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.275][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.277][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.278][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.280][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.282][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.283][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:54.285][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:54.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.287][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.289][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.290][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.293][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.294][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.296][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.298][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.299][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.301][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.304][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.306][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:54.307][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:54.308][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:54.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:54.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.312][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.313][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.315][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.317][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.318][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.320][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.322][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.323][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.324][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.327][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.328][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.329][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.332][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.333][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.335][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.337][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.338][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:54.340][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:54.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.342][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.343][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:54.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:54.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.347][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.348][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.349][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.352][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.353][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:54.354][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:54.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.357][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.358][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.361][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.366][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.368][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:54.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:54.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.371][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.374][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.376][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.377][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.379][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.382][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.384][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.385][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.387][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.389][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:07:54.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:54.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:54.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:54.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:54.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:54.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.495][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:54.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:54.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.500][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:54.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:54.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:54.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:54.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:54.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:54.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:54.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:54.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:54.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:54.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.547][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:54.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:54.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.552][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:54.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:54.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.557][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:54.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:54.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:54.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:54.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:54.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:54.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:54.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:54.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171368245, 2-fluoro-5-formyl-3-isopropoxy-benzoic acid, 2-fluoro-5-formyl-3-propan-2-yloxybenzoic acid, 2-fluoro-5-formyl-3-propan-2-yloxybenzoic acid, 2-fluoranyl-5-methanoyl-3-propan-2-yloxy-benzoic acid, ...].
biodb.DEBUG[2024-05-18 16:07:54.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:54.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:54.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:54.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:54.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:54.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:54.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:54.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:54.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:54.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:54.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:54.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:54.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:54.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:54.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:54.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:54.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:54.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:54.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.821][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:54.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:54.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.830][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:54.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:54.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:54.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:54.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:54.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:54.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:54.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.900][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:54.901][private$selectFields]
biodb.TRACE[2024-05-18 16:07:54.903][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:54.904][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:54.905][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:54.906][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:54.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:54.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.910][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.911][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.913][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:54.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.916][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.918][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.921][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:54.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.924][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.926][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.927][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:54.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.929][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.930][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.932][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:54.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.934][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.936][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.937][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:54.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.939][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.941][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:54.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:54.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.944][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.946][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:54.947][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:54.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.951][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.953][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.955][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:54.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.958][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.960][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:54.971][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:54.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.975][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.976][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.977][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:54.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.980][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.982][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.984][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:54.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.986][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.987][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:54.989][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:54.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.991][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.993][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.994][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:54.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:54.997][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:54.998][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:54.999][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.002][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.003][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.004][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.007][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.008][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:55.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:55.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.012][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.013][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.015][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.018][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.019][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.020][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.023][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.024][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.026][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.028][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.029][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.030][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.034][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.036][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.038][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.039][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:55.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:55.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.043][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.044][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:55.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:55.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.050][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.058][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.059][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:55.060][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:55.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.063][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.064][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.068][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.074][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.075][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:55.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:55.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.079][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.080][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.081][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.083][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.085][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.086][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.089][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.090][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.091][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.094][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.095][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:55.097][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:55.098][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:55.099][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:55.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.102][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.103][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.104][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.107][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.108][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.109][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.112][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.113][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.114][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.117][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.118][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.119][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.122][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.123][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.124][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.126][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.128][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:55.129][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:55.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.132][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.133][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:55.134][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:55.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.137][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.138][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.139][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.142][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.143][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:55.144][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:55.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.147][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.148][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.153][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.157][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.158][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:55.160][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:55.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.162][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.163][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.165][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.167][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.168][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.170][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.172][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.173][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.175][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.177][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.178][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:07:55.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:55.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:55.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:55.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:55.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:55.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:55.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:55.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:55.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.278][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:55.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:55.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:55.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:55.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:55.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:55.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:55.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:55.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:55.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:55.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.318][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:55.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:55.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.323][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:55.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:55.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.328][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:55.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:55.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:55.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:55.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:55.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:55.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:55.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:55.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171367693, 4-fluoro-3-formyl-5-isopropoxy-benzoic acid, 4-fluoro-3-formyl-5-propan-2-yloxybenzoic acid, 4-fluoro-3-formyl-5-propan-2-yloxybenzoic acid, 4-fluoranyl-3-methanoyl-5-propan-2-yloxy-benzoic acid, ...].
biodb.DEBUG[2024-05-18 16:07:55.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:55.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:55.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:55.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:55.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:55.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:55.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:55.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:55.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:55.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:55.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:55.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:55.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:55.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:55.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:55.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:55.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:55.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:55.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:55.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.563][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:55.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:55.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.568][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:55.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:55.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:55.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:55.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:55.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:55.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.640][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:55.642][private$selectFields]
biodb.TRACE[2024-05-18 16:07:55.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:55.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:55.646][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:55.647][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:55.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:55.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.651][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.653][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.654][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.656][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.658][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.659][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.662][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.663][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.664][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.667][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.668][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.669][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.672][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.673][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.674][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.677][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.678][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:55.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:55.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.682][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:55.684][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:55.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.687][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.689][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.692][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.693][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:55.694][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:55.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.698][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.700][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.701][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.704][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.705][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.706][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.709][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.710][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:55.712][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:55.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.714][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.719][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.720][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.721][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.724][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.726][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.727][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.730][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.731][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:55.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:55.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.735][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.736][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.738][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.740][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.741][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.743][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.745][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.746][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.748][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.750][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.752][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.753][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.756][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.757][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.758][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.761][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.762][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:55.764][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:55.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.766][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.767][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:55.769][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:55.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.771][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.774][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.776][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.778][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:55.779][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:55.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.784][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.785][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.789][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.791][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.793][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.797][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.800][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:55.802][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:55.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.806][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.808][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.812][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.814][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.815][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.818][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.819][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.821][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.824][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.825][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:55.826][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:55.827][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:55.829][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:55.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.832][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.834][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.836][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.838][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.839][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.841][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.851][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.853][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.854][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.857][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.858][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.860][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:55.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.862][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.864][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.867][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:55.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.871][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.872][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:55.874][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:55.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.876][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.878][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:55.879][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:55.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.882][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.884][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.886][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:55.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.889][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.890][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:55.891][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:55.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.894][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.895][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.897][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:55.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.899][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.902][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:55.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.905][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.907][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:55.909][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:55.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.913][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.915][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.916][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:55.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.919][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.921][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.923][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:55.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.927][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.930][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.932][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:55.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.934][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.936][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:07:55.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:55.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:55.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:55.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:55.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:55.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:55.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:55.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:55.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:55.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:55.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:55.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:56.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:56.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:56.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:56.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:56.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:56.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:56.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:56.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:56.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:56.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.085][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:56.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:56.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.091][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:56.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:56.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.097][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:56.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:56.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:56.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:56.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:56.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:56.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:56.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.195][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.208][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171367665, 3-fluoro-2-formyl-4-propoxy-benzoic acid, 3-fluoro-2-formyl-4-propoxybenzoic acid, 3-fluoro-2-formyl-4-propoxybenzoic acid, 3-fluoranyl-2-methanoyl-4-propoxy-benzoic acid, ...].
biodb.DEBUG[2024-05-18 16:07:56.209][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:56.210][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:56.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:56.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:56.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:56.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:56.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:56.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:56.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:56.241][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:56.245][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:56.247][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-18 16:07:56.249][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:56.251][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-18 16:07:56.253][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:56.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:56.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:56.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:56.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:56.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:56.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:56.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:56.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:56.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:56.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:56.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:56.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:56.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:56.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:56.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:56.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:56.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:56.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:56.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.374][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:56.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:56.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.379][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:56.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:56.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:56.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:56.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:56.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:56.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.445][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:56.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.450][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:56.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:56.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.455][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:56.456][private$selectFields]
biodb.TRACE[2024-05-18 16:07:56.457][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:56.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:56.460][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:56.461][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:56.463][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:56.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.465][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.466][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.468][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.470][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.472][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.473][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.475][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.477][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.478][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.480][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.482][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.483][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.486][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.487][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.488][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.491][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.492][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:56.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:56.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.496][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.497][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:56.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:56.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.500][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.502][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.505][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.507][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:56.508][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:56.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.510][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.512][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.513][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.515][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.517][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.520][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.522][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:56.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:56.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.525][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.530][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.532][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.533][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.535][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.537][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.538][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.540][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.542][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:56.543][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:56.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.545][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.547][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:56.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:56.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.550][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.552][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.553][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.556][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.557][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.558][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.561][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.562][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.563][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.565][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.567][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.568][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.570][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.572][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.573][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.575][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.577][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:56.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:56.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.580][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:56.583][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:56.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.585][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.588][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.590][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.591][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:56.593][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:56.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.595][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.596][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.600][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.603][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.605][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.606][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:56.608][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:56.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.610][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.615][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.616][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.617][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.620][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.621][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.622][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.625][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.626][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:56.627][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:56.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.630][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.631][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:56.632][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:56.634][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:56.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:56.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.640][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.642][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.644][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.648][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.650][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.652][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.656][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.658][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.660][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.664][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.666][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.668][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.672][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.674][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.676][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.680][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.682][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:56.684][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:56.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.688][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.690][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:56.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:56.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.696][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.699][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.705][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.707][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:56.709][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:56.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.713][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.715][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.717][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:56.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.721][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.723][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.725][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:56.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.729][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.731][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:56.733][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:56.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.737][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.739][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.741][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:56.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.745][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.747][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.749][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:56.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.753][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.755][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.758][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:56.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.762][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.776][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:07:56.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:56.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:56.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:56.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:56.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:56.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:56.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:56.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:56.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:56.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:56.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:56.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:56.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:56.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:56.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:56.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:56.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:56.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:56.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:56.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:56.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:56.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:56.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:56.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:56.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:56.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.008][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:57.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:57.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.016][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:57.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:57.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.024][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:57.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:57.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:57.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:57.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:57.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:57.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:57.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.166][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171380427, 2-(octanoyl(15N)amino)acetic acid, 2-(1-oxooctyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)(1,2-13C2)ethanoic acid, ...].
biodb.DEBUG[2024-05-18 16:07:57.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:57.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:57.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:57.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:57.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:57.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:57.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:57.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:57.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:57.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:57.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:57.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:57.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:57.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:57.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:57.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:57.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:57.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:57.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.273][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:57.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:57.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.278][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:57.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:57.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:57.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:57.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:57.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:57.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.355][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:57.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:57.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.362][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:57.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:57.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.370][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:57.372][private$selectFields]
biodb.TRACE[2024-05-18 16:07:57.373][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:57.375][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:57.377][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:57.379][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:57.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:57.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.384][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.385][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.386][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.389][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.390][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.391][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.394][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.395][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.396][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.399][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.400][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.402][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.404][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.405][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.407][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.409][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.410][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:57.412][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:57.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.414][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.415][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:57.417][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:57.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.419][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.420][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.422][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.424][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.426][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:57.427][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:57.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.431][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.432][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.434][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.439][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.441][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:57.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:57.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.444][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.446][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.450][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.452][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.453][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.456][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.457][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.458][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.461][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.462][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:57.463][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:57.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.466][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.468][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:57.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:57.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.474][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.475][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.477][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.482][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.484][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.486][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.489][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.490][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.491][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.494][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.495][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.496][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.499][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.500][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.501][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.504][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.505][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:57.507][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:57.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.511][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.513][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:57.516][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:57.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.518][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.520][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.521][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.523][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.525][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:57.527][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:57.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.531][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.533][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.535][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.539][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.540][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.542][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.544][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.545][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:57.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:57.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.549][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.550][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.552][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.554][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.555][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.557][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.559][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.561][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.563][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.565][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.567][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:57.568][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:57.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.570][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.572][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:57.573][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:57.576][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:57.578][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:57.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.582][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.583][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.585][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.587][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.588][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.590][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.592][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.594][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.595][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.599][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.601][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.603][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.607][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.608][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.610][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.612][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.613][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:57.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:57.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.617][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:57.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:57.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.622][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.623][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.627][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.628][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:57.629][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:57.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.632][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.633][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.634][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.637][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.640][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.641][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.644][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.645][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:57.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:57.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.649][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.651][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.654][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.655][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.656][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.658][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.660][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.661][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:57.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.664][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.666][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:07:57.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:57.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:57.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:57.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:57.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:57.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:57.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:57.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:57.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:57.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:57.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:57.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:57.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:57.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:57.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:57.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:57.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:57.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:57.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:57.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:57.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.877][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:57.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:57.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.885][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:57.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:57.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.893][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:57.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:57.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:57.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:57.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:57.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:57.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:57.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:57.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:57.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:57.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:57.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:57.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:57.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:57.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.025][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-05-18 16:07:58.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:58.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:58.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:58.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:58.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:58.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:58.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:58.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:58.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:58.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:58.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:58.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:58.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:58.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:58.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:58.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:58.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:58.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:58.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:58.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.130][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:58.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:58.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.135][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:58.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:58.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:58.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:58.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:58.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:58.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.199][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:58.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:58.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.204][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:58.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:58.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.209][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:58.210][private$selectFields]
biodb.TRACE[2024-05-18 16:07:58.211][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:58.212][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:58.214][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:58.215][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:58.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:58.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.218][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.220][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.221][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.223][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.224][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.226][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.228][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.230][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.231][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.233][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.234][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.236][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.238][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.239][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.240][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.243][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.244][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:58.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:58.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.247][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:58.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:58.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.253][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.257][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.258][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:58.260][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:58.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.262][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.263][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.267][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.271][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.273][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:58.274][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:58.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.276][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.277][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.289][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.291][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.292][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.295][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.296][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.297][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.300][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.301][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:58.303][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:58.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.307][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.309][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:58.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:58.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.315][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.317][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.319][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.323][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.325][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.327][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.331][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.333][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.336][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.338][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.339][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.341][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.343][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.344][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.346][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.350][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.352][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:58.354][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:58.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.358][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.359][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:58.360][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:58.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.363][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.364][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.365][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.368][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.369][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:58.370][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:58.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.373][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.374][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.375][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.378][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.380][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.381][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.385][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:58.386][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:58.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.389][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.393][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.397][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.399][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.401][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.403][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.404][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.406][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.408][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.409][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:58.410][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:58.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.413][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.414][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:58.415][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:58.417][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:58.418][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:58.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.424][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.426][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.430][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.431][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.433][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.435][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.436][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.438][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.441][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.442][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.444][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.447][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.449][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.450][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.452][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.454][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:58.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:58.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.460][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.462][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:58.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:58.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.468][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.470][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.471][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.474][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.475][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:58.476][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:58.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.479][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.480][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.481][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.484][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.488][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.490][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:58.491][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:58.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.493][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.495][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.496][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.498][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.499][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.501][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.503][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.505][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.506][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.508][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.510][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:07:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:58.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:58.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:58.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:58.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:58.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:58.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:58.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:58.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.614][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:58.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:58.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:58.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:58.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:58.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:58.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:58.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:58.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:58.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:58.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.668][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:58.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:58.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.673][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:58.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:58.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.679][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:58.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:58.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:58.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:58.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:58.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:58.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:58.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:58.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:58.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:58.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:58.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:58.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:58.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.833][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171375796, (Z)-2-cyano-3-phenyl-3-sulfanyl-prop-2-enamide, (Z)-2-cyano-3-mercapto-3-phenyl-2-propenamide, (Z)-2-cyano-3-phenyl-3-sulfanylprop-2-enamide, (Z)-2-cyano-3-phenyl-3-sulfanyl-prop-2-enamide, ...].
biodb.DEBUG[2024-05-18 16:07:58.835][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:07:58.836][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:07:58.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:58.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:58.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:58.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:58.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:58.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:58.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:07:58.866][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-18 16:07:58.870][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:07:58.872][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-18 16:07:58.874][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:07:58.876][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-18 16:07:58.878][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:07:58.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:58.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:58.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:58.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:58.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:58.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:58.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:58.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:58.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:58.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:58.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:58.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:58.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:58.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:58.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:58.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:58.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:58.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:58.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:58.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:58.998][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:59.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:59.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:59.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:59.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:59.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.036][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:59.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:59.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.041][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:59.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:59.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:59.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:59.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:59.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:59.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.133][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:59.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:59.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:59.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:59.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.147][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:59.148][private$selectFields]
biodb.TRACE[2024-05-18 16:07:59.149][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:07:59.150][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:07:59.151][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:59.153][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:59.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:59.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.159][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.161][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.162][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.166][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.168][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.171][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.175][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.177][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.179][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.183][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.185][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.188][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.192][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.193][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.195][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.199][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.200][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:59.202][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:59.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.206][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.207][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:59.209][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:59.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.213][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.214][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.216][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.219][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.221][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:59.223][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:59.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.227][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.229][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.234][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.236][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.238][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.241][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.243][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:59.245][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:59.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.248][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.250][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.252][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.255][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.257][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.259][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.262][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.264][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.265][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.269][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.271][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:59.272][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:59.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.276][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.278][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:59.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:59.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.283][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.285][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.287][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.290][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.292][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.294][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.297][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.299][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.300][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.304][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.306][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.307][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.311][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.312][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.314][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.318][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.320][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:59.321][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:59.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.325][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:59.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:59.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.333][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.334][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.336][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.340][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.341][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:59.343][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:59.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.347][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.348][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.350][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.366][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.368][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.370][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.374][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.376][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:59.378][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:59.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.382][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.384][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.386][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.389][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.391][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.393][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.396][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.398][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.400][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.403][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.405][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:07:59.407][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:07:59.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.411][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.412][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:59.414][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:07:59.416][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:59.418][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:59.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.421][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.423][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.426][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.431][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.433][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.436][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.438][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.440][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.443][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.445][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.447][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.451][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.453][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.455][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.459][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.461][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:59.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:59.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.467][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:59.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:59.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.475][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.483][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.485][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:59.488][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:59.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.491][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.493][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.499][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.503][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.507][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.509][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:59.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:59.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.515][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.516][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.520][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.521][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.522][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.525][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.526][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.527][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.531][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.532][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:07:59.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:59.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:59.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:59.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:59.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:59.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:59.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:59.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:59.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:59.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:59.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:59.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:59.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:59.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:59.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:59.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:59.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:59.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:07:59.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.726][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:59.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:59.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.731][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:59.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:59.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.737][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:07:59.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:07:59.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:07:59.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:07:59.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:59.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:59.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:59.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:59.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:07:59.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:07:59.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:07:59.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:07:59.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:07:59.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.867][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171368245, 2-fluoro-5-formyl-3-isopropoxy-benzoic acid, 2-fluoro-5-formyl-3-propan-2-yloxybenzoic acid, 2-fluoro-5-formyl-3-propan-2-yloxybenzoic acid, 2-fluoranyl-5-methanoyl-3-propan-2-yloxy-benzoic acid, ...].
biodb.DEBUG[2024-05-18 16:07:59.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:07:59.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:07:59.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:07:59.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:07:59.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:07:59.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:07:59.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:07:59.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:59.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:59.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:07:59.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:07:59.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:07:59.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:07:59.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:07:59.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:07:59.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:07:59.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:59.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:59.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:07:59.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:07:59.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:59.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:07:59.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:07:59.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:07:59.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:07:59.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:00.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.024][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:00.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:00.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.030][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:00.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:00.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:00.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:00.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:00.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:00.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.097][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.102][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.108][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:00.110][private$selectFields]
biodb.TRACE[2024-05-18 16:08:00.112][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:00.114][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:00.116][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:00.118][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:00.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:00.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.125][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.127][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.129][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.133][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.135][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.138][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.142][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.144][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.146][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.148][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.149][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.151][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.153][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.154][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.156][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.158][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.159][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:00.161][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:00.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.163][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:00.166][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:00.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.168][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.173][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.175][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:00.176][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:00.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.179][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.180][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.181][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.184][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.190][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.191][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:00.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:00.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.195][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.198][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.200][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.201][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.203][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.205][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.207][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.208][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.211][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.212][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.215][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.218][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.220][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:00.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:00.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.224][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.225][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.227][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.229][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.230][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.232][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.234][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.235][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.237][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.239][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.240][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.242][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.244][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.246][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.247][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.249][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.251][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:00.252][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:00.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.254][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.256][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:00.257][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:00.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.259][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.264][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.266][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:00.267][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:00.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.269][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.270][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.272][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.274][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.275][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.277][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.279][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.280][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:00.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:00.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.284][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.285][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.289][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.290][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.292][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.294][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.295][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.297][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.299][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.300][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.302][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.304][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.305][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:00.307][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:00.308][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:00.309][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:00.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.311][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.313][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.314][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.316][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.318][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.319][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.321][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.323][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.324][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.326][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.328][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.329][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.331][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.332][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.334][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.336][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.337][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:00.339][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:00.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.341][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.342][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:00.344][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:00.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.346][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.349][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.351][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.352][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:00.353][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:00.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.356][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.357][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.358][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.361][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.366][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.367][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:00.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:00.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.371][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.376][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.377][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.378][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.389][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.390][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.392][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.395][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.396][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:00.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:00.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:00.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:00.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:00.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:00.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:00.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:00.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:00.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:00.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:00.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:00.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:00.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:00.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:00.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:00.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:00.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:00.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:00.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.542][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:00.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:00.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.547][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:00.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:00.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.552][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:00.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:00.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:00.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:00.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:00.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:00.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:00.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.683][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171367693, 4-fluoro-3-formyl-5-isopropoxy-benzoic acid, 4-fluoro-3-formyl-5-propan-2-yloxybenzoic acid, 4-fluoro-3-formyl-5-propan-2-yloxybenzoic acid, 4-fluoranyl-3-methanoyl-5-propan-2-yloxy-benzoic acid, ...].
biodb.DEBUG[2024-05-18 16:08:00.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:00.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:00.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:00.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:00.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:00.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:00.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:00.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:00.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:00.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:00.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:00.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:00.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:00.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:00.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:00.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:00.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:00.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:00.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:00.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.804][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:00.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:00.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.809][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:00.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:00.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:00.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:00.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:00.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:00.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.884][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.895][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:00.896][private$selectFields]
biodb.TRACE[2024-05-18 16:08:00.898][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:00.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:00.901][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:00.902][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:00.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:00.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.906][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.907][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.908][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.912][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.913][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.915][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.917][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.918][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:00.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.920][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.921][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.923][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:00.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.925][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.926][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.928][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:00.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.932][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:00.934][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:00.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.936][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.937][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:00.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:00.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.941][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.942][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.944][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:00.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.946][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.947][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:00.948][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:00.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.951][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.952][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.953][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:00.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.955][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.957][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.958][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:00.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.960][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.961][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:00.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:00.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.965][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.967][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:00.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.970][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.971][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.972][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:00.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.975][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.976][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.978][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:00.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.981][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.982][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.983][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:00.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.986][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.988][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:00.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:00.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.992][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.993][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.994][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:00.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:00.996][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:00.998][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:00.999][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.001][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.002][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.004][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.006][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.007][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.009][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.011][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.012][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.013][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.016][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.017][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:01.018][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:01.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.021][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.022][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:01.023][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:01.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.025][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.027][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.030][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.031][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:01.033][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:01.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.035][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.037][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.038][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.040][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.042][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.043][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.045][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.046][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:01.048][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:01.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.050][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.053][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.055][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.056][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.057][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.060][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.061][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.062][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.064][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.066][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:01.067][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:01.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.069][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.070][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:01.072][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:01.073][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:01.074][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:01.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.076][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.078][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.079][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.081][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.082][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.084][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.086][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.088][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.090][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.092][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.093][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.095][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.097][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.098][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.099][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.102][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.103][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:01.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:01.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.107][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.108][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:01.109][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:01.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.111][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.113][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.114][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.116][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.117][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:01.119][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:01.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.121][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.122][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.124][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.126][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.127][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.128][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.132][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.133][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:01.135][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:01.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.137][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.142][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.143][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.144][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.147][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.148][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.149][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.153][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:01.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:01.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:01.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:01.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:01.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:01.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:01.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:01.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:01.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:01.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:01.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:01.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:01.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:01.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:01.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:01.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:01.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:01.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:01.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.298][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:01.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:01.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.304][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:01.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:01.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.309][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:01.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:01.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:01.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:01.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:01.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:01.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:01.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:01.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.412][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171367665, 3-fluoro-2-formyl-4-propoxy-benzoic acid, 3-fluoro-2-formyl-4-propoxybenzoic acid, 3-fluoro-2-formyl-4-propoxybenzoic acid, 3-fluoranyl-2-methanoyl-4-propoxy-benzoic acid, ...].
biodb.DEBUG[2024-05-18 16:08:01.413][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:08:01.414][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:08:01.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:08:01.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:01.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:01.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:01.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:01.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:01.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:01.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:01.484][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:08:01.488][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:08:01.490][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-18 16:08:01.491][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:08:01.493][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-18 16:08:01.496][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:08:01.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:01.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:01.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:01.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:01.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:01.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:01.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:01.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:01.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:01.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:01.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:01.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:01.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:01.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:01.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:01.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:01.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:01.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:01.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:01.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.600][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:01.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:01.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.605][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:01.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:01.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:01.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:01.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:01.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:01.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.685][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:01.686][private$selectFields]
biodb.TRACE[2024-05-18 16:08:01.687][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:01.688][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:01.690][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:01.691][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:01.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:01.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.698][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.699][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.701][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.703][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.704][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.706][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.708][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.709][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.711][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.713][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.714][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.716][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.718][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.719][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.721][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.723][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.724][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:01.726][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:01.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.728][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.729][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:01.731][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:01.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.733][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.734][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.735][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.738][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.739][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:01.740][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:01.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.743][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.744][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.749][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.751][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.756][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.758][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:01.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:01.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.761][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.763][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.764][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.766][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.768][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.770][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.772][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.774][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.775][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.777][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.779][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:01.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:01.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.783][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.785][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.787][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.788][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.789][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.792][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.793][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.794][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.797][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.798][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.799][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.801][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.803][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.804][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.806][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.808][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:01.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:01.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.814][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.816][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:01.817][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:01.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.820][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.821][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.822][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.824][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.826][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:01.827][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:01.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.829][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.830][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.834][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.835][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.837][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.839][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.840][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:01.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:01.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.844][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.845][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.847][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.849][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.850][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.851][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.854][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.855][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.856][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.859][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.860][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:01.861][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:01.862][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:01.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:01.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.866][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.867][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.869][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.871][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.872][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.874][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:01.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.878][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.880][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.882][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:01.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.885][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.886][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.887][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:01.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.890][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.891][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.892][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:01.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.894][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.896][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:01.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:01.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.899][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.900][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:01.902][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:01.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.904][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.907][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:01.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.909][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.910][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:01.911][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:01.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.914][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.915][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.916][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:01.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.920][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:01.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.928][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.929][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:01.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:01.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.933][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.934][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:01.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.938][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.939][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.940][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:01.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.942][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.944][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.946][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:01.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.950][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.952][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:01.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:01.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:01.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:01.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:01.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:01.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:01.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:01.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:01.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:01.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:02.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:02.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.074][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:02.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:02.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:02.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:02.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:02.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:02.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:02.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:02.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:02.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:02.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.119][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:02.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:02.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.141][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:02.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:02.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.150][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:02.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:02.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:02.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:02.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:02.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:02.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:02.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:02.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.279][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-05-18 16:08:02.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:02.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:02.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:02.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:02.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:02.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:02.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:02.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:02.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:02.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:02.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:02.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:02.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:02.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:02.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:02.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:02.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:02.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:02.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:02.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.392][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:02.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:02.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.397][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:02.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:02.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:02.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:02.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:02.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:02.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.461][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:02.462][private$selectFields]
biodb.TRACE[2024-05-18 16:08:02.463][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:02.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:02.466][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:02.467][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:02.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:02.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.471][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.472][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.473][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.476][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.477][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.479][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.481][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.482][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.483][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.486][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.487][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.488][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.490][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.492][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.493][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.495][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.496][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:02.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:02.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.500][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.501][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:02.502][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:02.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.505][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.506][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.507][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.509][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.511][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:02.512][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:02.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.514][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.515][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.517][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.519][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.520][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.521][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.524][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.525][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:02.526][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:02.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.528][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.531][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.534][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.535][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.538][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.539][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.541][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.543][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.544][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:02.546][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:02.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.548][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.549][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.550][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.553][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.554][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.555][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.558][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.559][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.560][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.562][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.563][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.565][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.567][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.575][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.577][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.580][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.581][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:02.583][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:02.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.585][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.587][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:02.588][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:02.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.591][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.592][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.593][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.595][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.597][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:02.598][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:02.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.600][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.602][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.605][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.607][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.608][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.610][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.612][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:02.613][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:02.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.615][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.617][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.618][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.620][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.621][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.623][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.625][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.626][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.628][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.630][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.631][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:02.633][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:02.634][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:02.635][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:02.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.638][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.639][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.640][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.642][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.644][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.645][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.647][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.648][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.650][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.652][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.653][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.655][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.657][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.658][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.659][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.662][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.663][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:02.664][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:02.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.667][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.668][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:02.669][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:02.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.671][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.674][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.676][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.677][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:02.679][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:02.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.681][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.682][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.684][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.686][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.691][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.692][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:02.693][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:02.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.696][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.697][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.698][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.700][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.702][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.703][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.705][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.706][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.708][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.710][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.711][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:02.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:02.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:02.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:02.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:02.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:02.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:02.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:02.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:02.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:02.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:02.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:02.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:02.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:02.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:02.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:02.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:02.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:02.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:02.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:02.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:02.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:02.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:02.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:02.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.847][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:02.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:02.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.852][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:02.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:02.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.857][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:02.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:02.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:02.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:02.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:02.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:02.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:02.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:02.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:02.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:02.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:02.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:02.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:02.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.960][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171372625, tert-butyl 3-amino-2-fluoro-pyrrolidine-1-carboxylate, 3-amino-2-fluoro-1-pyrrolidinecarboxylic acid tert-butyl ester, tert-butyl 3-amino-2-fluoropyrrolidine-1-carboxylate, tert-butyl 3-azanyl-2-fluoranyl-pyrrolidine-1-carboxylate, ...].
biodb.DEBUG[2024-05-18 16:08:02.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:02.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:02.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:02.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:02.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:02.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:02.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:02.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:02.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:02.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:02.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:02.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:02.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:02.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:03.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:03.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:03.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:03.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:03.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:03.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:03.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:03.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.090][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:03.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.095][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:03.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:03.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:03.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:03.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:03.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:03.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.155][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.160][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:03.161][private$selectFields]
biodb.TRACE[2024-05-18 16:08:03.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:03.163][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:03.165][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:03.166][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:03.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:03.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.170][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.171][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.172][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.175][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.176][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.177][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.179][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.181][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.182][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.184][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.185][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.187][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.189][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.190][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.191][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.194][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.195][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:03.196][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:03.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.199][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.200][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:03.201][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:03.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.203][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.205][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.208][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.209][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:03.211][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:03.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.213][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.214][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.218][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.219][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.223][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.224][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:03.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:03.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.227][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.229][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.230][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.232][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.233][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.235][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.237][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.238][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.239][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.242][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.243][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:03.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:03.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.247][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.248][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.249][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.251][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.253][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.254][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.256][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.257][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.259][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.261][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.262][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.264][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.266][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.267][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.268][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.271][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.272][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:03.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:03.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.276][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.277][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:03.278][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:03.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.280][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.282][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.283][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.287][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.289][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:03.291][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:03.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.295][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.296][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.297][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.300][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.301][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.305][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.306][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:03.308][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:03.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.310][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.311][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.312][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.315][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.316][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.317][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.320][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.321][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.322][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.324][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.326][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:03.327][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:03.328][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:03.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:03.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.332][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.333][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.334][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.337][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.338][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.339][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.342][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.343][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.344][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.346][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.348][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.349][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.351][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.352][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.354][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.356][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.357][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:03.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:03.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.361][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.362][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:03.363][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:03.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.365][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.371][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:03.373][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:03.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.375][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.376][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.377][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.380][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.385][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.386][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:03.387][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:03.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.402][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.404][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.405][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.408][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.409][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.410][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.413][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.414][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:03.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:03.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:03.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:03.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:03.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:03.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:03.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:03.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:03.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:03.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:03.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.536][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:03.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:03.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:03.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:03.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:03.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:03.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:03.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:03.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.571][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:03.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:03.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.576][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:03.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:03.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.581][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:03.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:03.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:03.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:03.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:03.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:03.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:03.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:03.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.650][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.689][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171372572, 5-(3-ethylphenyl)pent-4-enoic acid, 5-(3-ethylphenyl)-4-pentenoic acid, 5-(3-ethylphenyl)pent-4-enoic acid, 5-(3-ethylphenyl)pent-4-enoic acid, ...].
biodb.DEBUG[2024-05-18 16:08:03.690][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:08:03.692][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:08:03.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:03.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:03.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:03.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:03.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:03.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:03.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:03.716][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:08:03.720][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:08:03.722][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-18 16:08:03.723][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:08:03.726][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-18 16:08:03.728][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:08:03.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:03.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:03.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:03.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:03.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:03.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:03.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:03.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:03.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:03.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:03.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:03.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:03.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:03.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:03.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:03.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:03.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:03.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:03.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:03.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.849][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:03.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:03.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.854][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:03.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:03.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:03.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:03.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:03.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:03.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:03.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.922][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:03.924][private$selectFields]
biodb.TRACE[2024-05-18 16:08:03.925][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:03.927][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:03.928][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:03.930][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:03.931][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:03.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.933][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.935][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.936][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:03.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.938][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.940][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.941][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:03.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.943][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.944][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.946][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:03.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.948][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.949][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.951][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:03.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.953][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.954][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.955][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:03.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.958][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.959][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:03.960][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:03.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.963][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.964][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:03.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:03.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.968][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.970][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:03.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.972][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.974][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:03.975][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:03.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.978][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.979][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.980][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:03.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.983][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.984][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.985][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:03.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.988][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.989][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:03.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:03.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.993][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.994][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.995][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:03.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:03.998][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:03.999][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.000][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.003][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.004][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.005][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.008][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.009][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:04.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:04.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.013][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.014][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.015][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.018][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.019][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.020][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.023][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.025][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.026][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.028][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.030][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.031][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.035][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.036][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.038][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.040][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:04.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:04.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.043][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:04.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:04.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.048][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.053][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.054][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:04.056][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:04.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.058][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.059][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.060][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.063][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.064][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.068][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.069][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:04.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:04.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.073][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.075][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.077][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.079][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.080][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.082][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.084][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.085][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.087][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.089][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:08:04.090][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:08:04.091][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:04.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:04.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.095][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.096][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.097][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.100][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.101][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.102][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.104][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.106][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.107][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.109][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.111][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.112][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.114][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.116][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.117][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.119][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.121][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:04.122][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:04.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.124][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.125][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:04.127][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:04.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.129][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.130][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.132][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.134][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.135][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.137][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.139][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.140][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.141][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.144][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.145][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:04.146][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:04.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.149][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.150][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.151][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.154][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.155][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.156][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.158][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.160][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.161][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.163][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.165][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:04.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:04.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:04.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:04.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:04.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:04.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:04.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:04.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:04.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:04.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:04.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:04.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:04.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:04.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:04.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:04.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:04.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:04.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:04.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:04.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:04.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:04.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:04.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:04.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:04.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.411][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374155, potassium;(2,4-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-05-18 16:08:04.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:04.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:04.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:04.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:04.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:04.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:04.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:04.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:04.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:04.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:04.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:04.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:04.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:04.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:04.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:04.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:04.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:04.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:04.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:04.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.516][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:04.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:04.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.521][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:04.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:04.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:04.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:04.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:04.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:04.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.586][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:04.587][private$selectFields]
biodb.TRACE[2024-05-18 16:08:04.588][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:04.590][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:04.591][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:04.592][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:04.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:04.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.596][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.597][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.598][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.601][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.602][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.603][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.606][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.607][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.608][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.611][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.612][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.613][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.617][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.619][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.621][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.622][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:04.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:04.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.626][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:04.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:04.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.631][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.634][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.636][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.637][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:04.639][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:04.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.641][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.643][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.644][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.646][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.649][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.660][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.662][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:04.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:04.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.666][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.668][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.669][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.672][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.673][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.674][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.677][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.678][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.680][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.682][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.683][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:04.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:04.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.687][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.689][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.690][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.692][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.694][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.695][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.698][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.699][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.700][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.703][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.704][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.706][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.709][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.711][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.713][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.717][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.719][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:04.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:04.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.723][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.724][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:04.726][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:04.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.728][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.729][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.731][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.733][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.735][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:04.736][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:04.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.738][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.740][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.741][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.743][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.745][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.748][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.750][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:04.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:04.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.753][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.755][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.756][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.759][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.760][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.761][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.764][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.765][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.766][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.769][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.770][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:08:04.771][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:08:04.772][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:04.774][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:04.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.776][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.777][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.779][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.781][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.782][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.784][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.786][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.787][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.789][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.791][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.792][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.793][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.797][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.798][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.801][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.802][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:04.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:04.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.806][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:04.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:04.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.810][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.812][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.815][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.816][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.818][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.820][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.821][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.823][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.825][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.826][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:04.828][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:04.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.830][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.831][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.832][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:04.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.835][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.836][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.837][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:04.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.840][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.841][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.842][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:04.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.845][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.846][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:04.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:04.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:04.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:04.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:04.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:04.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:04.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:04.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:04.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:04.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:04.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:04.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:04.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:04.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:04.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:04.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.947][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:04.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:04.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:04.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:04.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:04.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:04.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:04.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:04.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:04.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:04.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:04.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:04.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:04.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:05.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:05.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:05.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:05.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:05.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:05.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.119][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374057, potassium;(2,3-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-05-18 16:08:05.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:05.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:05.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:05.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:05.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:05.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:05.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:05.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:05.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:05.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:05.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:05.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:05.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:05.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:05.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:05.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:05.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:05.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:05.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.229][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:05.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:05.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.234][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:05.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:05.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:05.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:05.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:05.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:05.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.299][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:05.300][private$selectFields]
biodb.TRACE[2024-05-18 16:08:05.302][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:05.303][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:05.304][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:05.305][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:05.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:05.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.309][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.310][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.311][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.314][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.315][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.316][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.318][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.320][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.321][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.323][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.325][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.326][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.328][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.329][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.331][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.334][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.335][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:05.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:05.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.339][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.340][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:05.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:05.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.343][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.348][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.349][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:05.351][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:05.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.353][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.354][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.358][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.363][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.364][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:05.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:05.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.368][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.369][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.370][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.372][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.374][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.375][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.377][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.379][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.380][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.384][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:05.385][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:05.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.388][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.389][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.390][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.393][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.394][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.395][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.397][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.399][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.400][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.402][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.404][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.405][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.407][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.408][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.410][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.413][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:05.415][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:05.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.417][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.418][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:05.419][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:05.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.424][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.427][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.428][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:05.430][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:05.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.432][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.433][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.435][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.437][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.438][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.440][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.442][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.443][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:05.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:05.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.447][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.448][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.449][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.452][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.453][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.454][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.456][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.458][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.459][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.461][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.463][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:05.464][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:05.465][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:05.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:05.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.469][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.470][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.471][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.474][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.475][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.476][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.479][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.481][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.482][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.484][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.486][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.487][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.489][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.490][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.492][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.494][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.495][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:05.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:05.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.499][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.500][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:05.502][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:05.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.504][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.513][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.514][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.517][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.518][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:05.519][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:05.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.522][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.523][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.525][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.528][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.529][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.530][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.534][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:05.535][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:05.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.538][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.539][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.540][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.543][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.544][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.545][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.548][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.549][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.550][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.553][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.554][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:05.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:05.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:05.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:05.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:05.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:05.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:05.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:05.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:05.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:05.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:05.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:05.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:05.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:05.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:05.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:05.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:05.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:05.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:05.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.694][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:05.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:05.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.699][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:05.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:05.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.704][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:05.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:05.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:05.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:05.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:05.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:05.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:05.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:05.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:05.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:05.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:05.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.806][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171369134, (E)-7-(1,3-benzodioxol-5-yl)hept-4-en-2,6-diyn-1-ol, (E)-7-(1,3-benzodioxol-5-yl)-1-hept-4-en-2,6-diynol, (E)-7-(1,3-benzodioxol-5-yl)hept-4-en-2,6-diyn-1-ol, (E)-7-(1,3-benzodioxol-5-yl)hept-4-en-2,6-diyn-1-ol, ...].
biodb.DEBUG[2024-05-18 16:08:05.807][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:08:05.808][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:08:05.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:05.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:05.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:05.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:05.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:05.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:05.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:05.838][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:08:05.841][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:08:05.843][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-18 16:08:05.845][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:08:05.847][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-18 16:08:05.849][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:08:05.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:05.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:05.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:05.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:05.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:05.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:05.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:05.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:05.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:05.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:05.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:05.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:05.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:05.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:05.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:05.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:05.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:05.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:05.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:05.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:05.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:05.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:05.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:05.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:05.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:05.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.965][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:05.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:05.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.970][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:05.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:05.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:05.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:05.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:05.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:05.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:05.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:05.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:06.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:06.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.035][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.040][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.045][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:06.046][private$selectFields]
biodb.TRACE[2024-05-18 16:08:06.048][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:06.049][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:06.050][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:06.051][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:06.052][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:06.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.055][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.056][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.057][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.060][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.061][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.062][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.065][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.066][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.067][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.070][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.071][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.072][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.074][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.076][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.077][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.079][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.081][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:06.082][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:06.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.084][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.086][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:06.087][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:06.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.089][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.094][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.095][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:06.097][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:06.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.099][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.100][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.101][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.104][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.105][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.106][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.109][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.110][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:06.111][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:06.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.113][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.115][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.116][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.118][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.119][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.121][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.123][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.124][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.126][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.128][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.129][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.130][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.133][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.134][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:06.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:06.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.138][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.139][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.140][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.142][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.144][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.145][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.147][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.148][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.150][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.153][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.154][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.157][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.158][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.159][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.162][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.163][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:06.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:06.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.166][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:06.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:06.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.171][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.173][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.175][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.180][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:06.182][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:06.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.185][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.187][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.189][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.193][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.197][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.201][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.203][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:06.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:06.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.206][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.208][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.209][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.211][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.212][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.214][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.216][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.217][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.219][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.221][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.222][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.223][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.226][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.227][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:06.228][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:06.229][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:06.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:06.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.233][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.234][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.236][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.238][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.239][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.240][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.243][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.244][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.245][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.247][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.249][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.250][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.253][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.255][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.257][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.258][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:06.260][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:06.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.262][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.263][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:06.264][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:06.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.267][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.268][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.269][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.271][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.273][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:06.274][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:06.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.276][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.277][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.281][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.282][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.284][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.286][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.287][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:06.288][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:06.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.291][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.296][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.297][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.298][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.300][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.302][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.303][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.305][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.307][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:06.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:06.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:06.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:06.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:06.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:06.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:06.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:06.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:06.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:06.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:06.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:06.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:06.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:06.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:06.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:06.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:06.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:06.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:06.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.456][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:06.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:06.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.461][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:06.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:06.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.466][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:06.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:06.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:06.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:06.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:06.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:06.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:06.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:06.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.571][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-05-18 16:08:06.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:06.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:06.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:06.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:06.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:06.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:06.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:06.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:06.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:06.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:06.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:06.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:06.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:06.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:06.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:06.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:06.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:06.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:06.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:06.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.684][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:06.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:06.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.689][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:06.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:06.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:06.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:06.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:06.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:06.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.769][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.774][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:06.775][private$selectFields]
biodb.TRACE[2024-05-18 16:08:06.777][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:06.778][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:06.779][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:06.780][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:06.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:06.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.784][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.785][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.786][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.790][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.792][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.794][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.798][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.800][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.802][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.805][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.806][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.807][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.810][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.812][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.814][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.818][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.820][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:06.822][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:06.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.825][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:06.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:06.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.830][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.833][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.835][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.837][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:06.839][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:06.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.842][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.843][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.847][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.851][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.853][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:06.854][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:06.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.856][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.858][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.859][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.861][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.862][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.864][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.867][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.868][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.870][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.872][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.873][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.875][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.877][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.878][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:06.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:06.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.883][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.885][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.886][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.888][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.890][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.891][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.893][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.894][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.896][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.898][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.899][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.901][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.903][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.904][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.906][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:06.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.908][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.909][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:06.911][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:06.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.913][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:06.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:06.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.918][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.920][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.921][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:06.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.923][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.924][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:06.926][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:06.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.928][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.929][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:06.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.933][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.934][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:06.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.938][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.939][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:06.941][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:06.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.943][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:06.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.951][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.953][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.954][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:06.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.958][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.960][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:06.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.964][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.965][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.966][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:06.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.969][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.970][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:06.971][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:06.972][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:06.974][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:06.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.976][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.977][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.979][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:06.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.981][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.982][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.984][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:06.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.987][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.989][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.990][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:06.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.993][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.994][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.995][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:06.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:06.997][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:06.999][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.000][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.002][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.004][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:07.005][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:07.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.007][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:07.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:07.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.012][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.013][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.015][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.018][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.020][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:07.022][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:07.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.026][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.028][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.030][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.034][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.038][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.039][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:07.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:07.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.043][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.044][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.046][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.050][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.052][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.054][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.058][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.060][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.062][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.066][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.068][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:07.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:07.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:07.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:07.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:07.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:07.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:07.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:07.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:07.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:07.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:07.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:07.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:07.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:07.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:07.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:07.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:07.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.221][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:07.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:07.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.226][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:07.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:07.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.231][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:07.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:07.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:07.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:07.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:07.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:07.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:07.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:07.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.334][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171372625, tert-butyl 3-amino-2-fluoro-pyrrolidine-1-carboxylate, 3-amino-2-fluoro-1-pyrrolidinecarboxylic acid tert-butyl ester, tert-butyl 3-amino-2-fluoropyrrolidine-1-carboxylate, tert-butyl 3-azanyl-2-fluoranyl-pyrrolidine-1-carboxylate, ...].
biodb.DEBUG[2024-05-18 16:08:07.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:07.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:07.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:07.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:07.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:07.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:07.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:07.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:07.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:07.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:07.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:07.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:07.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:07.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:07.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:07.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:07.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:07.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:07.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:07.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.444][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:07.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:07.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.449][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:07.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:07.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:07.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:07.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:07.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:07.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:07.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:07.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:07.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:07.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.523][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:07.525][private$selectFields]
biodb.TRACE[2024-05-18 16:08:07.526][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:07.527][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:07.528][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:07.529][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:07.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:07.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.534][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.536][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.538][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.539][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.540][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.543][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.544][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.545][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.548][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.549][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.551][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.554][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.555][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.557][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.559][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.560][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:07.562][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:07.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.564][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.565][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:07.566][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:07.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.569][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.570][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.571][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.574][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.575][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:07.576][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:07.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.578][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.580][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.581][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.583][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.586][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.588][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.589][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:07.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:07.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.593][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.594][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.596][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.598][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.599][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.600][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.603][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.604][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.605][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.618][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:07.619][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:07.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.621][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.623][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:07.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:07.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.627][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.628][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.629][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.631][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.633][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.634][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.637][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.638][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.639][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.641][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.643][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.644][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.646][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.648][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.649][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.651][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.653][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:07.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:07.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.656][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:07.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:07.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.661][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.663][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.666][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.668][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:07.669][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:07.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.671][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.672][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.674][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.676][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.677][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.681][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.682][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:07.684][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:07.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.686][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.689][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.691][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.692][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.694][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.696][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.697][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.698][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.701][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.702][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:07.703][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:07.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.706][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.707][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:07.708][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:07.709][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:07.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:07.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.713][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.714][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.715][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.718][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.719][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.720][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.723][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.724][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.725][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.727][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.729][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.730][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.732][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.733][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.735][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.737][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.738][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:07.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:07.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.742][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.743][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:07.744][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:07.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.747][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.748][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.752][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.753][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:07.754][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:07.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.756][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.758][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.759][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.762][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.764][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.768][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.769][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:07.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:07.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.772][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.777][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.779][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.780][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:07.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.784][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.785][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:07.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.788][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.790][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:07.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:07.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:07.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:07.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:07.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:07.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:07.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:07.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:07.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:07.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:07.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:07.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.884][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:07.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:07.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.889][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:07.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:07.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:07.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:07.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:07.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:07.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:07.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:07.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:07.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:07.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:07.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.929][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:07.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:07.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.934][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:07.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:07.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.939][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:07.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:07.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:07.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:07.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:07.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:07.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:07.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:07.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:07.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:07.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:07.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:07.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171372572, 5-(3-ethylphenyl)pent-4-enoic acid, 5-(3-ethylphenyl)-4-pentenoic acid, 5-(3-ethylphenyl)pent-4-enoic acid, 5-(3-ethylphenyl)pent-4-enoic acid, ...].
biodb.DEBUG[2024-05-18 16:08:08.063][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:08:08.064][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-18 16:08:08.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:08.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:08.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:08.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:08.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:08.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:08.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:08.097][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-18 16:08:08.103][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-18 16:08:08.106][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-18 16:08:08.108][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-18 16:08:08.112][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-18 16:08:08.115][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-18 16:08:08.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:08.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:08.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:08.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:08.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:08.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:08.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:08.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:08.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:08.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:08.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:08.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:08.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:08.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:08.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:08.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:08.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:08.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:08.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.240][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:08.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:08.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.245][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:08.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:08.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:08.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:08.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:08.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:08.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.310][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:08.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:08.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:08.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:08.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.320][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:08.321][private$selectFields]
biodb.TRACE[2024-05-18 16:08:08.323][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:08.324][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:08.325][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:08.326][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:08.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:08.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.330][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.331][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.333][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.335][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.336][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.338][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.340][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.341][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.342][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.345][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.346][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.347][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.350][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.351][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.352][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.355][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.356][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:08.357][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:08.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.359][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.361][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:08.362][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:08.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.364][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.369][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.370][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:08.372][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:08.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.374][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.376][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.377][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.379][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.384][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.385][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:08.387][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:08.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.389][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.394][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.395][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.396][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.399][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.400][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.401][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.404][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.405][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:08.406][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:08.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.409][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.410][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:08.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:08.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.414][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.415][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.416][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.419][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.420][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.421][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.423][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.425][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.426][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.430][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.431][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.433][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.435][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.436][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.438][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.440][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:08.441][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:08.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.443][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.445][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:08.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:08.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.448][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.450][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.451][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.453][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.455][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:08.456][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:08.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.458][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.460][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.461][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.463][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.465][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.477][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.479][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:08.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:08.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.483][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.485][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.488][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.489][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.490][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.493][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.494][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.496][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.498][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.499][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:08.501][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:08.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.503][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.504][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:08:08.506][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:08:08.507][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:08.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:08.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.511][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.512][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.513][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.516][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.517][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.519][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.521][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.522][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.524][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.526][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.527][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.529][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.531][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.532][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.534][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.536][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.537][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:08.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:08.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.541][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.542][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:08.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:08.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.546][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.547][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.551][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.552][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.556][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.557][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.558][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.561][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.562][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:08.563][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:08.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.566][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.567][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.568][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.571][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.572][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.573][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.576][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.577][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.578][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.580][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.582][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:08.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:08.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:08.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:08.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:08.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:08.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:08.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:08.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:08.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:08.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:08.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:08.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:08.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:08.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:08.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:08.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:08.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:08.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:08.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:08.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:08.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:08.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:08.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:08.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:08.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:08.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:08.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:08.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.857][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374155, potassium;(2,4-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-05-18 16:08:08.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:08.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:08.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:08.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:08.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:08.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:08.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:08.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:08.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:08.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:08.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:08.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:08.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:08.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:08.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:08.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:08.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:08.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:08.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:08.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:08.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:08.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:08.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:08.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:08.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.981][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:08.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:08.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.987][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:08.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:08.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:08.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:08.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:08.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:09.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:09.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:09.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:09.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.047][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.056][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.061][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:09.062][private$selectFields]
biodb.TRACE[2024-05-18 16:08:09.064][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:09.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:09.066][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:09.067][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:09.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:09.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.071][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.072][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.073][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.076][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.077][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.078][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.082][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.083][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.085][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.086][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.088][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.090][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.091][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.093][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.095][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.096][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:09.098][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:09.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.100][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.101][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:09.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:09.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.105][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.106][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.107][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.110][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.111][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:09.112][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:09.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.114][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.115][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.117][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.119][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.121][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.124][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.125][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:09.126][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:09.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.129][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.131][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.133][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.135][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.136][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.138][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.140][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.141][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.144][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.145][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.146][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.148][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.150][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:09.151][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:09.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.153][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.154][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.156][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.158][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.159][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.160][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.163][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.164][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.165][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.167][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.169][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.170][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.172][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.173][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.175][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.177][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.178][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:09.179][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:09.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.183][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.184][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:09.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:09.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.187][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.189][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.192][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.193][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:09.195][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:09.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.197][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.198][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.199][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.206][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.208][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:09.209][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:09.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.211][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.212][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.214][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.216][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.217][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.218][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.221][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.222][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.223][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.225][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.227][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.228][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.231][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.232][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:08:09.234][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-18 16:08:09.235][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:09.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:09.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.238][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.240][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.241][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.243][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.244][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.246][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.248][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.249][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.250][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.253][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.254][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.255][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.257][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.259][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.260][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.262][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.263][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:09.265][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:09.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.267][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:09.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:09.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.272][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.273][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.274][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.277][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.279][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.282][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.283][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.287][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.288][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:09.289][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:09.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.292][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.293][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.296][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.298][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.299][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.301][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.302][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.304][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.306][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.307][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:09.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:09.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:09.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:09.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:09.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:09.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:09.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:09.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:09.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:09.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:09.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:09.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:09.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:09.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:09.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:09.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:09.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:09.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:09.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:09.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:09.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:09.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:09.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:09.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:09.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374057, potassium;(2,3-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-05-18 16:08:09.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:09.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:09.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:09.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:09.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:09.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:09.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:09.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:09.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:09.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:09.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:09.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.641][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:09.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:09.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:09.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:09.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:09.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:09.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:09.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:09.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.676][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:09.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:09.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.683][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:09.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:09.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:09.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:09.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:09.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:09.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.744][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.770][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:09.771][private$selectFields]
biodb.TRACE[2024-05-18 16:08:09.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-18 16:08:09.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-18 16:08:09.774][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:09.776][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:09.777][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:09.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.779][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.781][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.782][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.785][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.786][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.787][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.790][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.791][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.792][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.795][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.796][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.797][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.800][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.801][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.802][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.805][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.806][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:09.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:09.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.810][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.811][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:09.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:09.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.815][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.816][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.817][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.820][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.821][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:09.822][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:09.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.824][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.826][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.829][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.831][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.832][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.835][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.836][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:09.837][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:09.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.839][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.841][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.842][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.844][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.845][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.847][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.849][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.850][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.852][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.854][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.855][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.857][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.859][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.860][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:09.861][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:09.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.864][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.865][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.866][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.869][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.870][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.871][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.875][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.876][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.879][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.881][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.883][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.885][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.886][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.888][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.890][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.891][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:09.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:09.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.895][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.896][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:09.897][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:09.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.900][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.901][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.905][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.906][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:09.907][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:09.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.910][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.911][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.915][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.917][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:09.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.919][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.921][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:09.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:09.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.925][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.926][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:09.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.930][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.931][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.932][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:09.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.934][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.936][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.937][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:09.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.939][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.941][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.942][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-18 16:08:09.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.944][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.945][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:09.947][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-18 16:08:09.948][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:09.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:09.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.952][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.953][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.954][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:09.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.956][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.958][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.959][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:09.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.961][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.962][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.964][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:09.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.966][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.967][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.969][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:09.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.971][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.972][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.974][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:09.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.976][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.977][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:09.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:09.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.981][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.982][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:09.983][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:09.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.986][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:09.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.991][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.992][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:09.993][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:09.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:09.995][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:09.997][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:09.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.000][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.001][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:10.003][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:10.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.005][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.006][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:10.008][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:10.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.010][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:10.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:10.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.015][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.016][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:10.017][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:10.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.020][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.021][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:10.022][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:10.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.024][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.026][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-18 16:08:10.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:10.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:10.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:10.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:10.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:10.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:10.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:10.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:10.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:10.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:10.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:10.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-18 16:08:10.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:10.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:10.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:10.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:10.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:10.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-18 16:08:10.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:10.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:10.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:10.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:10.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:10.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-18 16:08:10.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:10.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:10.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:10.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:10.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:10.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-18 16:08:10.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:10.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:10.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:10.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:10.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:10.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-18 16:08:10.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:10.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:10.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:10.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-18 16:08:10.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-18 16:08:10.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:10.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:10.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:10.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:10.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-18 16:08:10.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-18 16:08:10.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:10.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:10.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:10.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:10.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-18 16:08:10.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-18 16:08:10.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.173][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:10.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:10.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.178][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:10.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:10.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.184][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-18 16:08:10.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-18 16:08:10.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:10.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:10.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:10.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:10.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:10.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-18 16:08:10.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:10.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:10.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:10.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:10.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:10.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-18 16:08:10.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:10.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:10.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:10.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:10.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-18 16:08:10.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-18 16:08:10.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:10.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:10.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:10.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:10.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:10.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:10.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:10.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:10.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:10.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:10.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:10.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-18 16:08:10.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:10.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:10.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:10.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:10.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:10.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-18 16:08:10.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.289][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171369134, (E)-7-(1,3-benzodioxol-5-yl)hept-4-en-2,6-diyn-1-ol, (E)-7-(1,3-benzodioxol-5-yl)-1-hept-4-en-2,6-diynol, (E)-7-(1,3-benzodioxol-5-yl)hept-4-en-2,6-diyn-1-ol, (E)-7-(1,3-benzodioxol-5-yl)hept-4-en-2,6-diyn-1-ol, ...].
biodb.DEBUG[2024-05-18 16:08:10.290][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-18 16:08:10.291][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-18 16:08:10.298][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:08:10.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:08:10.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:10.304][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-18 16:08:10.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-18 16:08:10.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:10.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:08:10.314][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-18 16:08:10.316][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-05-18 16:08:10.317][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-05-18 16:08:10.318][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-18 16:08:10.319][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.322][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.324][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-18 16:08:10.330][biodb::testContext]
biodb.INFO [2024-05-18 16:08:10.332][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:08:10.333][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-05-18 16:08:10.334][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-18 16:08:10.335][biodb::testContext]
biodb.INFO [2024-05-18 16:08:10.338][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-05-18 16:08:10.340][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-18 16:08:10.346][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:08:10.347][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-18 16:08:10.349][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-18 16:08:10.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.353][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-18 16:08:10.355][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-18 16:08:10.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.359][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-18 16:08:10.361][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-18 16:08:10.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.365][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-18 16:08:10.366][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-18 16:08:10.368][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-18 16:08:10.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.372][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-18 16:08:10.374][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-18 16:08:10.375][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-18 16:08:10.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.379][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-18 16:08:10.381][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-18 16:08:10.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.385][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-18 16:08:10.386][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-18 16:08:10.388][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-18 16:08:10.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.392][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-18 16:08:10.394][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-18 16:08:10.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.398][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-18 16:08:10.399][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-18 16:08:10.401][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-18 16:08:10.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.405][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:08:10.406][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-18 16:08:10.407][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-18 16:08:10.409][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-18 16:08:10.410][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-18 16:08:10.411][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-18 16:08:10.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.416][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-18 16:08:10.417][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-18 16:08:10.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.422][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-18 16:08:10.423][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-18 16:08:10.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.427][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-18 16:08:10.429][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-18 16:08:10.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.433][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-18 16:08:10.434][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-18 16:08:10.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.439][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-18 16:08:10.440][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-18 16:08:10.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.445][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-18 16:08:10.446][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-18 16:08:10.450][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-18 16:08:10.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.454][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-18 16:08:10.455][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-18 16:08:10.457][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-18 16:08:10.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.462][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-18 16:08:10.463][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:10.465][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-18 16:08:10.466][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.467][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:08:10.468][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.470][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:08:10.471][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:10.472][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:08:10.473][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:08:10.475][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:08:10.476][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.477][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-18 16:08:10.478][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:08:10.479][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.481][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.482][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:08:10.482][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:08:10.482][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:08:10.482][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:08:10.482][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:08:10.483][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:08:10.484][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:10.485][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:10.487][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:08:10.488][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:10.489][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:10.490][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:08:10.491][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.493][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:08:10.494][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:08:10.495][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:10.496][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.498][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-18 16:08:10.500][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:10.501][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:08:10.502][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.503][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:08:10.505][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.506][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:08:10.508][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:10.509][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:08:10.510][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:08:10.512][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:08:10.513][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.514][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-18 16:08:10.515][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:08:10.517][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.518][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.519][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:08:10.519][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:08:10.519][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:08:10.519][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-18 16:08:10.519][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-18 16:08:10.520][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:08:10.521][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:10.523][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:10.524][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:08:10.525][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:10.526][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:10.527][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:08:10.528][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.530][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:08:10.531][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:08:10.532][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:10.533][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.534][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-18 16:08:10.536][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.538][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-18 16:08:10.539][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.540][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:08:10.541][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.543][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:08:10.544][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:10.545][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:08:10.546][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-18 16:08:10.547][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:08:10.549][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:10.550][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-18 16:08:10.551][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:08:10.552][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.554][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.555][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.556][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:08:10.557][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:10.558][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:10.560][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:08:10.561][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:10.562][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:10.563][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:08:10.564][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.565][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:08:10.566][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:08:10.579][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:10.580][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.582][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-18 16:08:10.584][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.585][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-18 16:08:10.587][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.588][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:08:10.589][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.590][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:08:10.592][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:10.593][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:08:10.594][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-18 16:08:10.596][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:08:10.597][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:10.598][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-18 16:08:10.600][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:08:10.601][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.602][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:10.603][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.605][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-18 16:08:10.606][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:10.607][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:10.608][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:08:10.609][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:10.610][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:10.612][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:08:10.613][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.614][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:08:10.615][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:08:10.617][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:10.618][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:10.619][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:08:10.621][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.721][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-18 16:08:10.723][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-18 16:08:10.724][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-18 16:08:10.726][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-18 16:08:10.728][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-18 16:08:10.730][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-18 16:08:10.732][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-18 16:08:10.734][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-18 16:08:10.735][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-18 16:08:10.737][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-18 16:08:10.738][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-18 16:08:10.740][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-18 16:08:10.742][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-18 16:08:10.743][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-18 16:08:10.745][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:08:10.746][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:08:10.748][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-18 16:08:10.750][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-18 16:08:10.751][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-18 16:08:10.753][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-18 16:08:10.754][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-18 16:08:10.756][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-18 16:08:10.758][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-18 16:08:10.759][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-18 16:08:10.761][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-18 16:08:10.762][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-18 16:08:10.764][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-18 16:08:10.766][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-18 16:08:10.767][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-18 16:08:10.769][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-18 16:08:10.770][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-18 16:08:10.772][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-18 16:08:10.774][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-18 16:08:10.776][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-18 16:08:10.778][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-18 16:08:10.780][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-18 16:08:10.781][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-18 16:08:10.783][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-18 16:08:10.785][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-18 16:08:10.786][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-18 16:08:10.788][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-18 16:08:10.789][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-18 16:08:10.791][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-18 16:08:10.793][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-18 16:08:10.794][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-18 16:08:10.796][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:08:10.797][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-18 16:08:10.799][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-18 16:08:10.800][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-18 16:08:10.802][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-18 16:08:10.804][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-18 16:08:10.805][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-18 16:08:10.807][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-18 16:08:10.808][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-18 16:08:10.810][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-18 16:08:10.811][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-18 16:08:10.813][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-18 16:08:10.815][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-18 16:08:10.816][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-18 16:08:10.818][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-18 16:08:10.819][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-18 16:08:10.821][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-18 16:08:10.822][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-18 16:08:10.824][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-18 16:08:10.826][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-18 16:08:10.827][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-18 16:08:10.829][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-18 16:08:10.830][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-18 16:08:10.832][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-18 16:08:10.833][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-18 16:08:10.835][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-18 16:08:10.837][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-18 16:08:10.839][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-18 16:08:10.841][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-18 16:08:10.842][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-18 16:08:10.844][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-18 16:08:10.846][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-18 16:08:10.847][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-18 16:08:10.849][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-18 16:08:10.850][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-18 16:08:10.852][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-18 16:08:10.853][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-18 16:08:10.855][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-18 16:08:10.857][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-18 16:08:10.859][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-05-18 16:08:10.860][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-18 16:08:10.861][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.864][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:10.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:10.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:10.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:10.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:10.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:10.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:10.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:11.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:11.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:11.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:11.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:11.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:11.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:11.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-18 16:08:11.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:11.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:11.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:11.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:11.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:11.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-18 16:08:11.017][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-05-18 16:08:11.020][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-05-18 16:08:11.022][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.023][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-05-18 16:08:11.024][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.026][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:08:11.027][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.029][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:08:11.030][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.031][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:08:11.033][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-05-18 16:08:11.034][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:08:11.035][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.036][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-05-18 16:08:11.038][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:08:11.039][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-05-18 16:08:11.039][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-05-18 16:08:11.040][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:11.041][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:11.043][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:08:11.044][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:11.045][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:11.046][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:08:11.047][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:11.048][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:11.050][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:08:11.051][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-18 16:08:11.051][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-05-18 16:08:11.052][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:08:11.053][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:08:11.055][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.056][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:11.057][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-05-18 16:08:11.059][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.060][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-05-18 16:08:11.062][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.063][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:08:11.064][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.065][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:08:11.067][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.068][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:08:11.069][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:08:11.070][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:08:11.071][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.073][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-05-18 16:08:11.074][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:08:11.075][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-05-18 16:08:11.075][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-05-18 16:08:11.075][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-05-18 16:08:11.075][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-05-18 16:08:11.075][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-05-18 16:08:11.075][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-05-18 16:08:11.076][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:11.078][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:08:11.079][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-18 16:08:11.080][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:11.081][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:11.082][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:08:11.083][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:11.084][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:11.086][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:08:11.087][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:08:11.087][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:08:11.088][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:08:11.089][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:08:11.090][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.091][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:11.093][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-18 16:08:11.095][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:11.096][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-05-18 16:08:11.097][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.099][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:08:11.100][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.101][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:08:11.102][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.103][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:08:11.105][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:08:11.106][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:08:11.107][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.108][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-05-18 16:08:11.110][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:08:11.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-18 16:08:11.112][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:11.113][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-18 16:08:11.113][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-18 16:08:11.113][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-18 16:08:11.115][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:08:11.116][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:11.117][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:11.118][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:08:11.119][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:11.120][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:11.122][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:08:11.123][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:08:11.123][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:08:11.123][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:08:11.124][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:08:11.125][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:08:11.126][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.128][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:08:11.129][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-18 16:08:11.131][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.132][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-05-18 16:08:11.134][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.135][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-18 16:08:11.136][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.137][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-18 16:08:11.139][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.140][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-18 16:08:11.141][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-18 16:08:11.142][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-18 16:08:11.143][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.145][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-05-18 16:08:11.146][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-18 16:08:11.147][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-05-18 16:08:11.147][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-18 16:08:11.148][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-18 16:08:11.150][self$setPropertyValue]
biodb.DEBUG[2024-05-18 16:08:11.151][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-18 16:08:11.152][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:11.153][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:11.154][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-18 16:08:11.155][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-18 16:08:11.157][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-18 16:08:11.158][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-18 16:08:11.159][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:08:11.159][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-18 16:08:11.159][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-18 16:08:11.160][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-18 16:08:11.161][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-18 16:08:11.162][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-18 16:08:11.164][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:08:11.165][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-05-18 16:08:11.167][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-18 16:08:11.169][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-18 16:08:11.170][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-05-18 16:08:11.172][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-18 16:08:11.174][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-05-18 16:08:11.179][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-18 16:08:11.181][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-05-18 16:08:11.182][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-18 16:08:11.184][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-05-18 16:08:11.185][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:08:11.186][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:08:11.188][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-05-18 16:08:11.190][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:08:11.192][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-18 16:08:11.194][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-18 16:08:11.199][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-05-18 16:08:11.205][biodb::testThat]
biodb.INFO [2024-05-18 16:08:11.206][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-18 16:08:11.207][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:08:11.208][biodb::testThat]
biodb.TRACE[2024-05-18 16:08:11.212][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-05-18 16:08:11.214][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:08:11.217][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-05-18 16:08:11.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:11.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:11.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:11.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:11.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:11.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:11.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:11.234][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.238][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.245][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.246][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.249][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:08:11.305][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-05-18 16:08:11.308][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:08:11.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:08:11.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.313][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:08:11.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:08:11.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:08:11.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:08:11.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.323][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:08:11.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:08:11.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.328][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:08:11.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:08:11.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.332][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:08:11.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:08:11.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.337][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:08:11.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:08:11.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.452][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.456][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.492][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.508][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.512][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.519][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.523][ef$get] fields variable is a list.
biodb.INFO [2024-05-18 16:08:11.536][biodb::testThat]
biodb.INFO [2024-05-18 16:08:11.537][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-18 16:08:11.539][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:08:11.540][biodb::testThat]
biodb.DEBUG[2024-05-18 16:08:11.553][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-05-18 16:08:11.555][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-18 16:08:11.559][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.INFO [2024-05-18 16:08:11.561][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75" for "ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75".
biodb.TRACE[2024-05-18 16:08:11.563][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-18 16:08:11.564][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-18 16:08:11.566][conn$getEntryContent] 0 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-05-18 16:08:11.567][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Substance database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-18 16:08:11.568][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-18 16:08:11.570][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-18 16:08:11.571][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-18 16:08:11.573][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/substance/sid/3/XML".
biodb.DEBUG[2024-05-18 16:08:11.576][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-18 16:08:11.577][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-18 16:08:11.578][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/substance/sid/3/XML".
biodb.TRACE[2024-05-18 16:08:11.683][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/substance/sid/3/XML).
biodb.TRACE[2024-05-18 16:08:11.774][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml"
biodb.DEBUG[2024-05-18 16:08:11.777][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-18 16:08:11.779][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-05-18 16:08:11.780][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-05-18 16:08:11.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-18 16:08:11.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:11.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:11.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:11.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:11.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:11.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-18 16:08:11.798][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.799][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.802][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.808][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.812][ef$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-18 16:08:11.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-18 16:08:11.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-18 16:08:11.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-18 16:08:11.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-18 16:08:11.868][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-05-18 16:08:11.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-18 16:08:11.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-18 16:08:11.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:08:11.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-18 16:08:11.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:08:11.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-18 16:08:11.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:08:11.895][biodb::testThat]
biodb.INFO [2024-05-18 16:08:11.897][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-18 16:08:11.898][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:08:11.899][biodb::testThat]
biodb.INFO [2024-05-18 16:08:11.908][biodb::testThat]
biodb.INFO [2024-05-18 16:08:11.909][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-18 16:08:11.910][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:08:11.912][biodb::testThat]
biodb.WARN [2024-05-18 16:08:11.915][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-05-18 16:08:11.920][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-05-18 16:08:11.931][biodb::testThat]
biodb.INFO [2024-05-18 16:08:11.932][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-18 16:08:11.934][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:08:11.935][biodb::testThat]
biodb.TRACE[2024-05-18 16:08:11.948][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:08:11.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:08:11.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.953][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:08:11.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:08:11.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:08:11.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:08:11.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:11.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:11.998][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:08:11.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:08:12.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:12.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:12.003][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:08:12.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:08:12.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:12.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:12.008][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:08:12.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:08:12.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:12.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:12.014][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:08:12.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:08:12.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:12.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:12.020][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:08:12.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:08:12.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:12.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:12.026][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-18 16:08:12.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-18 16:08:12.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:12.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:12.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:08:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-18 16:08:12.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:12.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:12.036][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:08:12.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:08:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:12.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:12.041][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-18 16:08:12.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-18 16:08:12.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:12.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:12.046][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-18 16:08:12.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-18 16:08:12.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:12.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-18 16:08:12.051][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-18 16:08:12.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-18 16:08:12.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-18 16:08:12.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-18 16:08:12.064][biodb::testThat]
biodb.INFO [2024-05-18 16:08:12.066][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-18 16:08:12.067][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:08:12.068][biodb::testThat]
biodb.INFO [2024-05-18 16:08:12.079][biodb::testThat]
biodb.INFO [2024-05-18 16:08:12.081][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-18 16:08:12.082][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:08:12.083][biodb::testThat]
biodb.INFO [2024-05-18 16:08:12.095][biodb::testThat]
biodb.INFO [2024-05-18 16:08:12.097][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-18 16:08:12.098][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:08:12.099][biodb::testThat]
biodb.DEBUG[2024-05-18 16:08:12.103][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-05-18 16:08:12.186][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-05-18 16:08:12.300][biodb::testThat]
biodb.INFO [2024-05-18 16:08:12.301][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-18 16:08:12.302][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-18 16:08:12.303][biodb::testThat]
biodb.DEBUG[2024-05-18 16:08:12.380][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-05-18 16:08:12.440][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-18 16:08:12.442][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-05-18 16:08:12.443][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-05-18 16:08:12.445][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-18 16:08:12.447][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-18 16:08:12.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-18 16:08:12.451][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-18 16:08:12.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-18 16:08:12.454][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-18 16:08:12.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1037 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1037 ]
> 
> proc.time()
   user  system elapsed 
  62.79    3.39  110.65

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck'
* using R version 4.4.0 RC (2024-04-16 r86468 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbNcbi/DESCRIPTION' ... OK
* this is package 'biodbNcbi' version '1.9.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbNcbi' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... WARNING
'library' or 'require' call not declared from: 'biodbNci'
* checking tests in 'longtests' ...
  Running 'testthat.R'
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log'
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package 'biodbNcbi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)