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BUILD BIN report for readat on tokay2

This page was generated on 2019-08-01 12:56:16 -0400 (Thu, 01 Aug 2019).

Package 1341/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
readat 1.10.0
Richard Cotton
Snapshot Date: 2019-07-31 17:00:58 -0400 (Wed, 31 Jul 2019)
URL: https://git.bioconductor.org/packages/readat
Branch: RELEASE_3_9
Last Commit: 097758c
Last Changed Date: 2019-05-02 11:54:03 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  ERROR  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  ERROR  ERROR  skipped  skipped 

Summary

Package: readat
Version: 1.10.0
Command: rm -rf readat.buildbin-libdir && mkdir readat.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=readat.buildbin-libdir readat_1.10.0.tar.gz
StartedAt: 2019-08-01 09:48:45 -0400 (Thu, 01 Aug 2019)
EndedAt: 2019-08-01 09:49:39 -0400 (Thu, 01 Aug 2019)
EllapsedTime: 53.6 seconds
RetCode: 0
Status:  OK  
PackageFile: readat_1.10.0.zip
PackageFileSize: 3.169 MiB

Command output

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### Running command:
###
###   rm -rf readat.buildbin-libdir && mkdir readat.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=readat.buildbin-libdir readat_1.10.0.tar.gz
###
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install for i386

* installing *source* package 'readat' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'readat'
    finding HTML links ... done
    WideSomaLogicData                       html  
    WideSomaLogicDataAttributes             html  
    aptamers                                html  
    as.ExpressionSet                        html  
    as.SummarizedExperiment                 html  
    chromosomalPositions                    html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEFYJby/R.INSTALL2c60572c7dad/readat/man/chromosomalPositions.Rd:7: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEFYJby/R.INSTALL2c60572c7dad/readat/man/chromosomalPositions.Rd:8: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    colnamesStartWithSeqId                  html  
    convertSeqIdToAptamer                   html  
    createSampleSubmission                  html  
    ensemblIds                              html  
    extractSampleData                       html  
    getChromosomalPositions                 html  
    getEnsemblIds                           html  
    getGoMolecularFunctions                 html  
    getKeggDefinitions                      html  
    getPfam                                 html  
    getSampleIdVar                          html  
    getSequencesWithLargestBetweenGroupVariation
                                            html  
    getUniProtKeywords                      html  
    goMolecularFunction                     html  
    isPass                                  html  
    isSomaEset                              html  
    keggDefinitions                         html  
    melt.WideSomaLogicData                  html  
    orderPlatePosition                      html  
    pfam                                    html  
    readAdat                                html  
    readComments                            html  
    readControls                            html  
    readFirstChar                           html  
    readSamples                             html  
    readSlides                              html  
    readat-defunct                          html  
    sub-.WideSomaLogicData                  html  
    uniprotKeywords                         html  
    writeSampleSubmissionForm               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'readat' ...
** using non-staged installation
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'readat' as readat_1.10.0.zip
* DONE (readat)