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INSTALL report for ggtree on tokay2

This page was generated on 2019-10-16 12:32:18 -0400 (Wed, 16 Oct 2019).

Package 678/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ggtree 1.16.6
Guangchuang Yu
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/ggtree
Branch: RELEASE_3_9
Last Commit: 245e2ec
Last Changed Date: 2019-08-26 06:20:34 -0400 (Mon, 26 Aug 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ggtree
Version: 1.16.6
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ggtree_1.16.6.tar.gz && rm -rf ggtree.buildbin-libdir && mkdir ggtree.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ggtree.buildbin-libdir ggtree_1.16.6.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ggtree_1.16.6.zip && rm ggtree_1.16.6.tar.gz ggtree_1.16.6.zip
StartedAt: 2019-10-15 19:15:40 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:17:30 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 110.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ggtree_1.16.6.tar.gz && rm -rf ggtree.buildbin-libdir && mkdir ggtree.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ggtree.buildbin-libdir ggtree_1.16.6.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ggtree_1.16.6.zip && rm ggtree_1.16.6.tar.gz ggtree_1.16.6.zip
###
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100  264k  100  264k    0     0  2671k      0 --:--:-- --:--:-- --:--:-- 2848k

install for i386

* installing *source* package 'ggtree' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ggtree'
    finding HTML links ... done
    Date2decimal                            html  
    add-TREEDATA                            html  
    add_TREEINFO                            html  
    add_colorbar                            html  
    annotation_image                        html  
    applyLayoutDaylight                     html  
    as.polytomy                             html  
    collapse                                html  
    decimal2Date                            html  
    dotFun                                  html  
    expand                                  html  
    facet_data                              html  
    facet_labeller                          html  
    facet_plot                              html  
    facet_widths                            html  
    flip                                    html  
    geom_aline                              html  
    geom_balance                            html  
    geom_cladelabel                         html  
    geom_cladelabel2                        html  
    geom_hilight                            html  
    geom_hilight_encircle                   html  
    geom_label2                             html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/geom_label2.Rd:52: file link 'geom_label' in package 'ggplot2' does not exist and so has been treated as a topic
    geom_motif                              html  
    geom_nodelab                            html  
    geom_nodelab2                           html  
    geom_nodepoint                          html  
    geom_point2                             html  
    geom_range                              html  
    geom_rootedge                           html  
    geom_rootpoint                          html  
    geom_segment2                           html  
    geom_strip                              html  
    geom_taxalink                           html  
    geom_text2                              html  
    geom_tiplab                             html  
    geom_tiplab2                            html  
    geom_tippoint                           html  
    geom_tree                               html  
    geom_tree2                              html  
    geom_treescale                          html  
    get.path                                html  
    getNodeAngle.df                         html  
    getNodesBreadthFirst.df                 html  
    getSubtree                              html  
    getSubtree.df                           html  
    getSubtreeUnrooted                      html  
    getSubtreeUnrooted.df                   html  
    getTreeArcAngles                        html  
    get_balance_position                    html  
    get_clade_position                      html  
    get_heatmap_column_position             html  
    get_taxa_name                           html  
    ggtree-ggproto                          html  
    ggtree                                  html  
    gheatmap                                html  
    gzoom-methods                           html  
    gzoom.phylo                             html  
    identify                                html  
    inset                                   html  
    layoutDaylight                          html  
    layoutEqualAngle                        html  
    msaplot                                 html  
    multiplot                               html  
    nodebar                                 html  
    nodeid                                  html  
    nodepie                                 html  
    open_tree                               html  
    phylopic                                html  
    range_format                            html  
    reexports                               html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:47: file link 'collapse' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:49: file link 'xlim' in package 'ggplot2' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:49: file link 'geom_label' in package 'ggplot2' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:51: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:55: file link 'read.beast' in package 'treeio' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:55: file link 'read.jtree' in package 'treeio' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpYdN19R/R.INSTALL16907a9d228/ggtree/man/reexports.Rd:55: file link 'read.mrbayes' in package 'treeio' does not exist and so has been treated as a topic
    revts                                   html  
    rotate                                  html  
    rotateTreePoints.df                     html  
    rotate_tree                             html  
    scaleClade                              html  
    scale_color-methods                     html  
    scale_x_ggtree                          html  
    set_hilight_legend                      html  
    stat_balance                            html  
    stat_hilight                            html  
    subview                                 html  
    theme_inset                             html  
    theme_tree                              html  
    theme_tree2                             html  
    update-TREE                             html  
    viewClade                               html  
    xlim_expand                             html  
    xlim_tree                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ggtree' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ggtree' as ggtree_1.16.6.zip
* DONE (ggtree)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ggtree' successfully unpacked and MD5 sums checked