Xiuwen Zheng
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/SeqArray |
| Branch: RELEASE_3_9 |
| Last Commit: 1ecfddf |
| Last Changed Date: 2019-07-11 22:49:49 -0400 (Thu, 11 Jul 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:02:31 -0400 (Wed, 16 Oct 2019).
| Package 1490/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SeqArray 1.24.2 Xiuwen Zheng
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | [ OK ] | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: SeqArray |
| Version: 1.24.2 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL SeqArray |
| StartedAt: 2019-10-15 18:35:54 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 18:36:38 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 44.2 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL SeqArray ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘SeqArray’ ... ** using staged installation ** libs g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c ConvToGDS.cpp -o ConvToGDS.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c FileMerge.cpp -o FileMerge.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c GetData.cpp -o GetData.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c Index.cpp -o Index.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c LinkSNPRelate.cpp -o LinkSNPRelate.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c Methods.cpp -o Methods.o gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c R_SeqArray.c -o R_SeqArray.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c ReadBySample.cpp -o ReadBySample.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c ReadByVariant.cpp -o ReadByVariant.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c SeqArray.cpp -o SeqArray.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c pkg_test.cpp -o pkg_test.o gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c samtools_ext.c -o samtools_ext.o gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -I"/home/biocbuild/bbs-3.9-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c vectorization.c -o vectorization.o g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o FileMerge.o GetData.o Index.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByVariant.o SeqArray.o pkg_test.o samtools_ext.o vectorization.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-SeqArray/00new/SeqArray/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SeqArray)