Package: MIMOSA

Version: 1.22.0

Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MIMOSA.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings MIMOSA_1.22.0.tar.gz

StartedAt: 2019-10-16 05:13:48 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 05:18:06 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 257.9 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: MIMOSA.Rcheck

Warnings: 1

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MIMOSA.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings MIMOSA_1.22.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/MIMOSA.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MIMOSA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MIMOSA' version '1.22.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .travis.yml
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'MIMOSA' can be installed ... WARNING
Found the following significant warnings:
  MCMC.cpp:73:9: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/MIMOSA.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.fitMCMC : : no visible global function definition for
  'read.table'
BetaMix: no visible global function definition for 'optim'
BetaMix : : no visible binding for global variable 'par'
ConstructMIMOSAExpressionSet : MIMOSAReshape: no visible global
  function definition for 'as.formula'
MDMix :  : : no visible global function
  definition for 'fisher.test'
MDMix: no visible global function definition for 'p.adjust'
MDMix : : no visible global function definition for
  'fisher.test'
MDMix : f: no visible global function definition for 'dbeta'
MDMix: no visible global function definition for 'optim'
MIMOSAExpressionSet: no visible global function definition for
  'ExpressionSet'
MIMOSAExpressionSet: no visible global function definition for
  'AnnotatedDataFrame'
alphaProp1: no visible global function definition for 'rnorm'
betaintegral_R : : no visible global function definition for
  'pbeta'
betaintegral_R : : no visible global function definition for
  'rbeta'
betaintegral_R2: no visible global function definition for 'dbeta'
betaintegral_R2: no visible global function definition for 'pbeta'
boxplotMIMOSAResultList: no visible global function definition for
  'ldply'
boxplotMIMOSAResultList: no visible global function definition for
  'aes'
boxplotMIMOSAResultList: no visible binding for global variable
  'Proportion'
boxplotMIMOSAResultList: no visible binding for global variable
  'Proportion_REF'
boxplotMIMOSAResultList: no visible global function definition for
  'geom_boxplot'
boxplotMIMOSAResultList: no visible global function definition for
  'coord_trans'
boxplotMIMOSAResultList: no visible global function definition for
  'facet_wrap'
boxplotMIMOSAResultList: no visible global function definition for
  'ggtitle'
boxplotMIMOSAResultList: no visible global function definition for
  'geom_jitter'
boxplotMIMOSAResultList: no visible global function definition for
  'position_jitter'
boxplotMIMOSAResultList: no visible global function definition for
  'scale_fill_brewer'
boxplotMIMOSAResultList: no visible global function definition for
  'scale_color_brewer'
boxplotMIMOSAResultList: no visible global function definition for
  'geom_line'
boxplotMIMOSAResultList: no visible binding for global variable 'PTID'
contourPlot : : no visible global function definition for
  'rbinom'
contourPlot: no visible global function definition for 'contour'
contourPlot: no visible global function definition for 'points'
estimate_logZus: no visible global function definition for 'rbeta'
estimate_logZus: no visible global function definition for 'pbeta'
f1: no visible global function definition for 'dbeta'
f1: no visible global function definition for 'pbeta'
f1.log: no visible global function definition for 'dbeta'
f1.log: no visible global function definition for 'pbeta'
f2: no visible global function definition for 'dbeta'
f2: no visible global function definition for 'pbeta'
f2.log: no visible global function definition for 'dbeta'
f2.log: no visible global function definition for 'pbeta'
gibbsPsPu: no visible global function definition for 'rbeta'
gibbsPsPu: no visible global function definition for 'qbeta'
gibbsPsPu: no visible global function definition for 'runif'
gibbsPsPu: no visible global function definition for 'pbeta'
gibbsPsPu: no visible global function definition for 'ecdf'
huberFilter: no visible global function definition for 'huber'
initBetaMix: no visible global function definition for 'var'
initBetaMix: no visible global function definition for 'optim'
initBetaMix : : no visible global function definition for
  'fisher.test'
initBetaMix: no visible global function definition for 'p.adjust'
initBetaMix : : no visible binding for global variable 'par'
integrand : : no visible global function definition for
  'dbeta'
integrand : : no visible global function definition for
  'pbeta'
match.elispot.antigens: no visible global function definition for
  'na.omit'
plot.BetaMixResult: no visible global function definition for 'plot'
plotPriors: no visible global function definition for 'qbeta'
plotPriors: no visible global function definition for 'dbeta'
plotPriors: no visible global function definition for 'pbeta'
plotPriors: no visible global function definition for 'plot'
plotPriors: no visible global function definition for 'lines'
plotPriors: no visible global function definition for 'legend'
plotPriors: no visible global function definition for 'title'
posteriorSample : : no visible global function definition
  for 'rbinom'
refactorPData: no visible global function definition for 'pData<-'
setpData.icsdata: no visible global function definition for 'pData<-'
simAlpha.s: no visible global function definition for 'dexp'
simAlpha.s: no visible global function definition for 'runif'
simAlpha.u: no visible global function definition for 'dexp'
simAlpha.u: no visible global function definition for 'runif'
simMD: no visible global function definition for 'runif'
simMD : : no visible global function definition for
  'rmultinom'
simQ: no visible global function definition for 'rbeta'
simulate2: no visible global function definition for 'rbeta'
simulate2: no visible global function definition for 'rnorm'
simulate2: no visible global function definition for 'rbinom'
test: no visible global function definition for 'optim'
volcanoPlot.MIMOSAResultList: no visible global function definition for
  'is.formula'
volcanoPlot.MIMOSAResultList: no visible global function definition for
  'facet_grid'
MIMOSA,formula-ExpressionSet: no visible binding for global variable
  'RefTreat'
MIMOSA,formula-ExpressionSet: no visible global function definition for
  'terms'
MIMOSA,formula-ExpressionSet: no visible global function definition for
  'model.frame'
MIMOSA,formula-ExpressionSet : : no visible global function
  definition for 'quantile'
MIMOSA,formula-ExpressionSet :  : : no visible
  global function definition for 'quantile'
MIMOSA,formula-ExpressionSet: no visible global function definition for
  'mclapply'
MIMOSA,formula-ExpressionSet :  :  : :
  no visible global function definition for 'quantile'
initialize,MIMOSAResult: no visible global function definition for
  'callNextMethod'
likelihoodSurfacePlot,BetaMixResult-integer-integer-integer-integer-numeric:
  no visible global function definition for 'image'
likelihoodSurfacePlot,BetaMixResult-integer-integer-integer-integer-numeric:
  no visible global function definition for 'gray.colors'
likelihoodSurfacePlot,BetaMixResult-integer-integer-integer-integer-numeric:
  no visible global function definition for 'contour'
likelihoodSurfacePlot,BetaMixResult-integer-integer-integer-integer-numeric:
  no visible global function definition for 'points'
likelihoodSurfacePlot,BetaMixResult-integer-integer-integer-integer-numeric
  : : no visible global function definition for 'p.adjust'
likelihoodSurfacePlot,BetaMixResult-integer-integer-integer-integer-numeric
  : : no visible global function definition for
  'fisher.test'
likelihoodSurfacePlot,BetaMixResult-integer-integer-integer-integer-numeric:
  no visible global function definition for 'lines'
pData<-,BetaMixResult-data.frame: no visible global function definition
  for 'pData<-'
summary,BetaMixResult: no visible global function definition for 'show'
Undefined global functions or variables:
  AnnotatedDataFrame ExpressionSet PTID Proportion Proportion_REF
  RefTreat aes as.formula callNextMethod contour coord_trans dbeta dexp
  ecdf facet_grid facet_wrap fisher.test geom_boxplot geom_jitter
  geom_line ggtitle gray.colors huber image is.formula ldply legend
  lines mclapply model.frame na.omit optim p.adjust pData<- par pbeta
  plot points position_jitter qbeta quantile rbeta rbinom read.table
  rmultinom rnorm runif scale_color_brewer scale_fill_brewer show terms
  title var
Consider adding
  importFrom("grDevices", "gray.colors")
  importFrom("graphics", "contour", "image", "legend", "lines", "par",
             "plot", "points", "title")
  importFrom("methods", "callNextMethod", "show")
  importFrom("stats", "as.formula", "dbeta", "dexp", "ecdf",
             "fisher.test", "model.frame", "na.omit", "optim",
             "p.adjust", "pbeta", "qbeta", "quantile", "rbeta", "rbinom",
             "rmultinom", "rnorm", "runif", "terms", "var")
  importFrom("utils", "read.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.9-bioc/R/library/MIMOSA/libs/i386/MIMOSA.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.9-bioc/R/library/MIMOSA/libs/x64/MIMOSA.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'test-all.R'
 OK
** running tests for arch 'x64' ...
  Running 'test-all.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.9-bioc/meat/MIMOSA.Rcheck/00check.log'
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/MIMOSA_1.22.0.tar.gz && rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MIMOSA.buildbin-libdir MIMOSA_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL MIMOSA_1.22.0.zip && rm MIMOSA_1.22.0.tar.gz MIMOSA_1.22.0.zip
###
##############################################################################
##############################################################################


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                                 Dload  Upload   Total   Spent    Left  Speed

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100 73918  100 73918    0     0   460k      0 --:--:-- --:--:-- --:--:--  481k

install for i386

* installing *source* package 'MIMOSA' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -O2 -Wall  -mtune=generic -c BetaMix.cpp -o BetaMix.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -O2 -Wall  -mtune=generic -c MCMC.cpp -o MCMC.o
MCMC.cpp: In function 'SEXPREC* fitMCMC(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
MCMC.cpp:73:9: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
  if(file==NULL|fileP==NULL){
         ^
MCMC.cpp:88:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if(alphas.size()!=stim.ncol()){
                  ^
MCMC.cpp:188:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i=0;i >&)':
MCMC.cpp:627:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i=0;i >&, std::vector >&, std::vector >&, std::vector >&, std::vector&, int, int)':
MCMC.cpp:677:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(i=0;i < lnull.size(); i++){
            ^
MCMC.cpp: In function 'double normconstIBeta(double, double, double, double)':
MCMC.cpp:811:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i=0;i >&)':
MCMC.cpp:627:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i=0;i >&, std::vector >&, std::vector >&, std::vector >&, std::vector&, int, int)':
MCMC.cpp:677:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(i=0;i < lnull.size(); i++){
            ^
MCMC.cpp: In function 'double normconstIBeta(double, double, double, double)':
MCMC.cpp:811:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for(int i=0;i

R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(MIMOSA)
Loading required package: MASS
Loading required package: plyr
Loading required package: reshape

Attaching package: 'reshape'

The following objects are masked from 'package:plyr':

    rename, round_any

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: ggplot2
> test_dir("testthat")
v |  OK F W S | Context

/ |   0       | MIMOSA fitting
- |   0   1   | MIMOSA fitting
\ |   0   2   | MIMOSA fitting
\ |   1   9   | MIMOSA fitting
v |   3   9   | MIMOSA fitting [1.9 s]
--------------------------------------------------------------------------------
test-MIMOSA.R:6: warning: (unknown)
Formula does not contain the RefTreat variable. It will be added automatically. Set RT=FALSE to disable this.

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced
--------------------------------------------------------------------------------

/ |   0       | getZ
v |   3       | getZ

/ |   0       | getW
v |   4       | getW

/ |   0       | countsTable
v |   8       | countsTable

/ |   0       | volcanoPlot
v |   2       | volcanoPlot

/ |   0       | pData
v |   4       | pData

== Results =====================================================================
Duration: 2.1 s

OK:       24
Failed:   0
Warnings: 9
Skipped:  0
> 
> proc.time()
   user  system elapsed 
   8.09    0.62    8.71 

R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(MIMOSA)
Loading required package: MASS
Loading required package: plyr
Loading required package: reshape

Attaching package: 'reshape'

The following objects are masked from 'package:plyr':

    rename, round_any

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: ggplot2
> test_dir("testthat")
v |  OK F W S | Context

/ |   0       | MIMOSA fitting
- |   0   1   | MIMOSA fitting
\ |   0   2   | MIMOSA fitting
\ |   1   9   | MIMOSA fitting
v |   3   9   | MIMOSA fitting [2.1 s]
--------------------------------------------------------------------------------
test-MIMOSA.R:6: warning: (unknown)
Formula does not contain the RefTreat variable. It will be added automatically. Set RT=FALSE to disable this.

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced

test-MIMOSA.R:6: warning: (unknown)
NaNs produced
--------------------------------------------------------------------------------

/ |   0       | getZ
v |   3       | getZ

/ |   0       | getW
v |   4       | getW

/ |   0       | countsTable
v |   8       | countsTable

/ |   0       | volcanoPlot
v |   2       | volcanoPlot

/ |   0       | pData
v |   4       | pData

== Results =====================================================================
Duration: 2.3 s

OK:       24
Failed:   0
Warnings: 9
Skipped:  0
> 
> proc.time()
   user  system elapsed 
   9.95    0.46   10.40