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INSTALL report for Linnorm on tokay2

This page was generated on 2019-10-16 12:35:33 -0400 (Wed, 16 Oct 2019).

Package 874/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Linnorm 2.8.0
Ken Shun Hang Yip
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/Linnorm
Branch: RELEASE_3_9
Last Commit: f2fd51d
Last Changed Date: 2019-05-02 11:54:01 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: Linnorm
Version: 2.8.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Linnorm_2.8.0.tar.gz && rm -rf Linnorm.buildbin-libdir && mkdir Linnorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Linnorm.buildbin-libdir Linnorm_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Linnorm_2.8.0.zip && rm Linnorm_2.8.0.tar.gz Linnorm_2.8.0.zip
StartedAt: 2019-10-15 21:10:00 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 21:11:02 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 61.3 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Linnorm_2.8.0.tar.gz && rm -rf Linnorm.buildbin-libdir && mkdir Linnorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Linnorm.buildbin-libdir Linnorm_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Linnorm_2.8.0.zip && rm Linnorm_2.8.0.tar.gz Linnorm_2.8.0.zip
###
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100 2416k  100 2416k    0     0  28.8M      0 --:--:-- --:--:-- --:--:-- 31.4M

install for i386

* installing *source* package 'Linnorm' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c Misc.cpp -o Misc.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o Linnorm.dll tmp.def Misc.o -std=c++11 -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -DARMA_64BIT_WORD=1 -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/Linnorm.buildbin-libdir/00LOCK-Linnorm/00new/Linnorm/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Linnorm'
    finding HTML links ... done
    Islam2011                               html  
    LIHC                                    html  
    LinearRegression                        html  
    LinearRegressionFP                      html  
    Linnorm.Cor                             html  
    Linnorm.DataImput                       html  
    Linnorm.HClust                          html  
    Linnorm.HVar                            html  
    Linnorm.Norm                            html  
    Linnorm.PCA                             html  
    Linnorm                                 html  
    Linnorm.SGenes                          html  
    Linnorm.limma                           html  
    Linnorm.tSNE                            html  
    RnaXSim                                 html  
    SEQC                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Linnorm' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c Misc.cpp -o Misc.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o Linnorm.dll tmp.def Misc.o -std=c++11 -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -DARMA_64BIT_WORD=1 -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/Linnorm.buildbin-libdir/Linnorm/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Linnorm' as Linnorm_2.8.0.zip
* DONE (Linnorm)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'Linnorm' successfully unpacked and MD5 sums checked