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INSTALL report for GenVisR on tokay2

This page was generated on 2019-10-16 12:34:51 -0400 (Wed, 16 Oct 2019).

Package 667/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenVisR 1.16.1
Zachary Skidmore
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/GenVisR
Branch: RELEASE_3_9
Last Commit: 6702c8f
Last Changed Date: 2019-08-16 14:32:08 -0400 (Fri, 16 Aug 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GenVisR
Version: 1.16.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GenVisR_1.16.1.tar.gz && rm -rf GenVisR.buildbin-libdir && mkdir GenVisR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenVisR.buildbin-libdir GenVisR_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GenVisR_1.16.1.zip && rm GenVisR_1.16.1.tar.gz GenVisR_1.16.1.zip
StartedAt: 2019-10-15 20:32:09 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:33:56 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 106.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GenVisR_1.16.1.tar.gz && rm -rf GenVisR.buildbin-libdir && mkdir GenVisR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenVisR.buildbin-libdir GenVisR_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GenVisR_1.16.1.zip && rm GenVisR_1.16.1.tar.gz GenVisR_1.16.1.zip
###
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install for i386

* installing *source* package 'GenVisR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenVisR'
    finding HTML links ... done
    Clinical-class                          html  
    GMS-class                               html  
    GMS_Virtual-class                       html  
    GMS_v4-class                            html  
    GenVisR                                 html  
    HCC1395_Germline                        html  
    HCC1395_N                               html  
    HCC1395_T                               html  
    Lolliplot-class                         html  
    LucCNseg                                html  
    MutSpectra-class                        html  
    MutationAnnotationFormat-class          html  
    MutationAnnotationFormat_Virtual-class
                                            html  
    MutationAnnotationFormat_v1.0-class     html  
    MutationAnnotationFormat_v2.0-class     html  
    MutationAnnotationFormat_v2.1-class     html  
    MutationAnnotationFormat_v2.2-class     html  
    MutationAnnotationFormat_v2.3-class     html  
    MutationAnnotationFormat_v2.4-class     html  
    PIK3CA                                  html  
    Rainfall-class                          html  
    SNPloci                                 html  
    TvTi                                    html  
    VEP-class                               html  
    VEP_Virtual-class                       html  
    VEP_v88-class                           html  
    Waterfall-class                         html  
    brcaMAF                                 html  
    cnFreq                                  html  
    cnSpec                                  html  
    cnView                                  html  
    compIdent                               html  
    covBars                                 html  
    cytoGeno                                html  
    drawPlot-methods                        html  
    genCov                                  html  
    geneViz                                 html  
    getData-methods                         html  
    getDescription-methods                  html  
    getGrob-methods                         html  
    getHeader-methods                       html  
    getMeta-methods                         html  
    getMutation-methods                     html  
    getPath-methods                         html  
    getPosition-methods                     html  
    getSample-methods                       html  
    getVersion-methods                      html  
    hg19chr                                 html  
    ideoView                                html  
    lohSpec                                 html  
    lohView                                 html  
    lolliplot                               html  
    lolliplot_AA2sidechain                  html  
    lolliplot_buildMain                     html  
    waterfall                               html  
    writeData-methods                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GenVisR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenVisR' as GenVisR_1.16.1.zip
* DONE (GenVisR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'GenVisR' successfully unpacked and MD5 sums checked