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INSTALL report for ChemmineOB on tokay2

This page was generated on 2019-10-16 12:28:26 -0400 (Wed, 16 Oct 2019).

Package 249/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChemmineOB 1.22.0
Thomas Girke
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/ChemmineOB
Branch: RELEASE_3_9
Last Commit: 62a806a
Last Changed Date: 2019-05-02 11:53:44 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: ChemmineOB
Version: 1.22.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ChemmineOB_1.22.0.tar.gz && rm -rf ChemmineOB.buildbin-libdir && mkdir ChemmineOB.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChemmineOB.buildbin-libdir ChemmineOB_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ChemmineOB_1.22.0.zip && rm ChemmineOB_1.22.0.tar.gz ChemmineOB_1.22.0.zip
StartedAt: 2019-10-15 19:38:55 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:57:21 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 1106.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ChemmineOB_1.22.0.tar.gz && rm -rf ChemmineOB.buildbin-libdir && mkdir ChemmineOB.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChemmineOB.buildbin-libdir ChemmineOB_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ChemmineOB_1.22.0.zip && rm ChemmineOB_1.22.0.tar.gz ChemmineOB_1.22.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  958k  100  958k    0     0  6063k      0 --:--:-- --:--:-- --:--:-- 6264k

install for i386

* installing *source* package 'ChemmineOB' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"  -IC:/openbabel/src/i386/include   -O2 -Wall  -mtune=generic -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp: In function 'SEXPREC* SWIG_MakePtr(void*, const char*, R_SWIG_Owner)':
ChemmineOB.cpp:953:15: warning: variable 'p' set but not used [-Wunused-but-set-variable]
   const char *p = typeName;
               ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"  -IC:/openbabel/src/i386/include   -O2 -Wall  -mtune=generic -c canonical.cpp -o canonical.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o ChemmineOB.dll tmp.def ChemmineOB.o canonical.o -LC:/openbabel/bin/i386/bin -lopenbabel -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/ChemmineOB.buildbin-libdir/00LOCK-ChemmineOB/00new/ChemmineOB/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'copyToR' with signature '"_p_std::pair<(unsigned int,unsigned int)>"': no definition for class "_p_std::pair<(unsigned int,unsigned int)>"
in method for 'copyToR' with signature '"_p_OpenBabel::DoubleType"': no definition for class "_p_OpenBabel::DoubleType"
in method for 'copyToR' with signature '"_p_OpenBabel::CharPtrLess"': no definition for class "_p_OpenBabel::CharPtrLess"
in method for 'copyToR' with signature '"_p_OpenBabel::FptIndexHeader"': no definition for class "_p_OpenBabel::FptIndexHeader"
in method for 'copyToR' with signature '"_p_OpenBabel::LineSearchType"': no definition for class "_p_OpenBabel::LineSearchType"
** help
*** installing help indices
  converting help for package 'ChemmineOB'
    finding HTML links ... done
    OB-classes                              html  
    canonicalNumbering_OB                   html  
    convertFormat                           html  
    convertFormatFile                       html  
    convertToImage                          html  
    exactMass_OB                            html  
    fingerprint_OB                          html  
    forEachMol                              html  
    prop_OB                                 html  
    smartsSearch_OB                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ChemmineOB' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"  -IC:/openbabel/src/x64/include   -O2 -Wall  -mtune=generic -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp: In function 'SEXPREC* SWIG_MakePtr(void*, const char*, R_SWIG_Owner)':
ChemmineOB.cpp:953:15: warning: variable 'p' set but not used [-Wunused-but-set-variable]
   const char *p = typeName;
               ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"  -IC:/openbabel/src/x64/include   -O2 -Wall  -mtune=generic -c canonical.cpp -o canonical.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o ChemmineOB.dll tmp.def ChemmineOB.o canonical.o -LC:/openbabel/bin/x64/bin -lopenbabel -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/ChemmineOB.buildbin-libdir/ChemmineOB/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChemmineOB' as ChemmineOB_1.22.0.zip
* DONE (ChemmineOB)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ChemmineOB' successfully unpacked and MD5 sums checked