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BUILD BIN report for BAGS on celaya2

This page was generated on 2019-10-16 12:49:47 -0400 (Wed, 16 Oct 2019).

Package 100/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BAGS 2.24.0
Alejandro Quiroz-Zarate
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/BAGS
Branch: RELEASE_3_9
Last Commit: af3df6a
Last Changed Date: 2019-05-02 11:53:34 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: BAGS
Version: 2.24.0
Command: rm -rf BAGS.buildbin-libdir && mkdir BAGS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BAGS_2.24.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BAGS.buildbin-libdir
StartedAt: 2019-10-16 08:11:13 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 08:11:30 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 17.7 seconds
RetCode: 0
Status:  OK 
PackageFile: BAGS_2.24.0.tgz
PackageFileSize: 284.8 KiB

Command output

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###
### Running command:
###
###   rm -rf BAGS.buildbin-libdir && mkdir BAGS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BAGS_2.24.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BAGS.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BAGS.buildbin-libdir BAGS_2.24.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BAGS’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c BAGS.c -o BAGS.o
In file included from BAGS.c:8:
./FuncionesFast-Final.h:145:70: warning: unused variable 'YMu1' [-Wunused-variable]
    double media1,media,varianza1,varianza,resultado,varaux0,varaux1,YMu1;
                                                                     ^
./FuncionesFast-Final.h:166:94: warning: unused variable 'A' [-Wunused-variable]
    double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                             ^
./FuncionesFast-Final.h:166:92: warning: unused variable 'C' [-Wunused-variable]
    double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                           ^
./FuncionesFast-Final.h:166:105: warning: unused variable 'MediaDiff' [-Wunused-variable]
    double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                                        ^
BAGS.c:25:20: warning: unused variable 'escala2' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;
                   ^
BAGS.c:25:28: warning: unused variable 'escala3' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;
                           ^
BAGS.c:25:36: warning: unused variable 'escala' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;
                                   ^
BAGS.c:25:43: warning: unused variable 'rate' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;
                                          ^
BAGS.c:25:48: warning: unused variable 'resI' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;
                                               ^
BAGS.c:24:12: warning: unused variable 'formaAux' [-Wunused-variable]
    double formaAux;
           ^
BAGS.c:25:12: warning: unused variable 'escala1' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;
           ^
BAGS.c:342:48: warning: unused variable 'resI' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                               ^
BAGS.c:342:43: warning: unused variable 'rate' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                          ^
BAGS.c:342:36: warning: unused variable 'escala' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                   ^
BAGS.c:342:28: warning: unused variable 'escala3' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                           ^
BAGS.c:342:20: warning: unused variable 'escala2' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                   ^
BAGS.c:342:12: warning: unused variable 'escala1' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
           ^
BAGS.c:341:12: warning: unused variable 'formaAux' [-Wunused-variable]
    double formaAux;
           ^
BAGS.c:593:12: warning: unused variable 'escala1' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
           ^
BAGS.c:593:20: warning: unused variable 'escala2' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                   ^
BAGS.c:592:12: warning: unused variable 'formaAux' [-Wunused-variable]
    double formaAux;
           ^
BAGS.c:593:43: warning: unused variable 'rate' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                          ^
BAGS.c:593:48: warning: unused variable 'resI' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                               ^
BAGS.c:593:28: warning: unused variable 'escala3' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                           ^
BAGS.c:593:36: warning: unused variable 'escala' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                   ^
BAGS.c:786:20: warning: unused variable 'escala2' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                   ^
BAGS.c:786:12: warning: unused variable 'escala1' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
           ^
BAGS.c:785:12: warning: unused variable 'formaAux' [-Wunused-variable]
    double formaAux;
           ^
BAGS.c:786:48: warning: unused variable 'resI' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                               ^
BAGS.c:786:36: warning: unused variable 'escala' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                   ^
BAGS.c:786:43: warning: unused variable 'rate' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                          ^
BAGS.c:786:28: warning: unused variable 'escala3' [-Wunused-variable]
    double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                           ^
32 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BAGS.so BAGS.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/BAGS.buildbin-libdir/00LOCK-BAGS/00new/BAGS/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BAGS)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BAGS.buildbin-libdir/BAGS/libs//BAGS.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "BAGS.buildbin-libdir/BAGS/libs//BAGS.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "BAGS.buildbin-libdir/BAGS/libs//BAGS.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "BAGS.buildbin-libdir/BAGS/libs//BAGS.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "BAGS.buildbin-libdir/BAGS/libs//BAGS.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "BAGS.buildbin-libdir/BAGS/libs//BAGS.so"