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INSTALL report for yarn on tokay2

This page was generated on 2019-10-16 12:37:15 -0400 (Wed, 16 Oct 2019).

Package 1738/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
yarn 1.10.0
Joseph N Paulson
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/yarn
Branch: RELEASE_3_9
Last Commit: 36ffe84
Last Changed Date: 2019-05-02 11:54:04 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: yarn
Version: 1.10.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/yarn_1.10.0.tar.gz && rm -rf yarn.buildbin-libdir && mkdir yarn.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=yarn.buildbin-libdir yarn_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL yarn_1.10.0.zip && rm yarn_1.10.0.tar.gz yarn_1.10.0.zip
StartedAt: 2019-10-15 21:08:39 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 21:09:58 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 79.1 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/yarn_1.10.0.tar.gz && rm -rf yarn.buildbin-libdir && mkdir yarn.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=yarn.buildbin-libdir yarn_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL yarn_1.10.0.zip && rm yarn_1.10.0.tar.gz yarn_1.10.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2706k  100 2706k    0     0  30.5M      0 --:--:-- --:--:-- --:--:-- 33.4M

install for i386

* installing *source* package 'yarn' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'yarn'
    finding HTML links ... done
    annotateFromBiomart                     html  
    bladder                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpe8cmKN/R.INSTALL2a946f7939aa/yarn/man/bladder.Rd:7: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    checkMisAnnotation                      html  
    checkTissuesToMerge                     html  
    downloadGTEx                            html  
    extractMatrix                           html  
    filterGenes                             html  
    filterLowGenes                          html  
    filterMissingGenes                      html  
    filterSamples                           html  
    normalizeTissueAware                    html  
    plotCMDS                                html  
    plotDensity                             html  
    plotHeatmap                             html  
    qsmooth                                 html  
    qstats                                  html  
    skin                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpe8cmKN/R.INSTALL2a946f7939aa/yarn/man/skin.Rd:7: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'yarn' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'yarn' as yarn_1.10.0.zip
* DONE (yarn)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'yarn' successfully unpacked and MD5 sums checked