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INSTALL report for twilight on tokay2

This page was generated on 2019-10-16 12:19:33 -0400 (Wed, 16 Oct 2019).

Package 1691/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
twilight 1.60.0
Stefanie Scheid
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/twilight
Branch: RELEASE_3_9
Last Commit: f2584a2
Last Changed Date: 2019-05-02 11:53:03 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: twilight
Version: 1.60.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/twilight_1.60.0.tar.gz && rm -rf twilight.buildbin-libdir && mkdir twilight.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=twilight.buildbin-libdir twilight_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL twilight_1.60.0.zip && rm twilight_1.60.0.tar.gz twilight_1.60.0.zip
StartedAt: 2019-10-15 18:49:25 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 18:50:03 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 38.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/twilight_1.60.0.tar.gz && rm -rf twilight.buildbin-libdir && mkdir twilight.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=twilight.buildbin-libdir twilight_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL twilight_1.60.0.zip && rm twilight_1.60.0.tar.gz twilight_1.60.0.zip
###
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100  634k  100  634k    0     0  8780k      0 --:--:-- --:--:-- --:--:-- 9767k

install for i386

* installing *source* package 'twilight' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c confidence.line.c -o confidence.line.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c correlation.c -o correlation.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c kstest.c -o kstest.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c sep.c -o sep.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c twosample.perm.c -o twosample.perm.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c twosample.single.c -o twosample.single.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o twilight.dll tmp.def confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/twilight.buildbin-libdir/00LOCK-twilight/00new/twilight/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'twilight'
    finding HTML links ... done
    exfdr                                   html  
    expval                                  html  
    plot.twilight                           html  
    print.twilight                          html  
    twilight                                html  
    twilight.combi                          html  
    twilight.filtering                      html  
    twilight.getlambda                      html  
    twilight.getmatrix                      html  
    twilight.permute.pair                   html  
    twilight.permute.unpair                 html  
    twilight.pval                           html  
    twilight.teststat                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'twilight' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c confidence.line.c -o confidence.line.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c correlation.c -o correlation.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c kstest.c -o kstest.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c sep.c -o sep.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c twosample.perm.c -o twosample.perm.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c twosample.single.c -o twosample.single.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o twilight.dll tmp.def confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/twilight.buildbin-libdir/twilight/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'twilight' as twilight_1.60.0.zip
* DONE (twilight)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'twilight' successfully unpacked and MD5 sums checked