Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

INSTALL report for tweeDEseq on tokay2

This page was generated on 2019-10-16 12:25:55 -0400 (Wed, 16 Oct 2019).

Package 1690/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tweeDEseq 1.30.0
Juan R Gonzalez
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/tweeDEseq
Branch: RELEASE_3_9
Last Commit: 8654b39
Last Changed Date: 2019-05-02 11:53:33 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: tweeDEseq
Version: 1.30.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/tweeDEseq_1.30.0.tar.gz && rm -rf tweeDEseq.buildbin-libdir && mkdir tweeDEseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tweeDEseq.buildbin-libdir tweeDEseq_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL tweeDEseq_1.30.0.zip && rm tweeDEseq_1.30.0.tar.gz tweeDEseq_1.30.0.zip
StartedAt: 2019-10-15 19:02:22 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:03:10 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 48.0 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/tweeDEseq_1.30.0.tar.gz && rm -rf tweeDEseq.buildbin-libdir && mkdir tweeDEseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tweeDEseq.buildbin-libdir tweeDEseq_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL tweeDEseq_1.30.0.zip && rm tweeDEseq_1.30.0.tar.gz tweeDEseq_1.30.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 43791  100 43791    0     0   779k      0 --:--:-- --:--:-- --:--:--  909k

install for i386

* installing *source* package 'tweeDEseq' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c cov_wt_C.c -o cov_wt_C.o
cov_wt_C.c: In function 'cov_wt_C':
cov_wt_C.c:79:14: warning: 'wvar' may be used uninitialized in this function [-Wmaybe-uninitialized]
   free(aux), free(wvar), free(y);
              ^
cov_wt_C.c: In function 'momentEstimates_wt_C':
cov_wt_C.c:154:12: warning: 'moments' may be used uninitialized in this function [-Wmaybe-uninitialized]
   free(y), free(moments), free(aux);
            ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c init_tweeDEseq.c -o init_tweeDEseq.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c loglikGlm.c -o loglikGlm.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c logprobs.c -o logprobs.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c permtest.c -o permtest.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c probs.c -o probs.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c zhu2.c -o zhu2.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c zhu3.c -o zhu3.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o tweeDEseq.dll tmp.def cov_wt_C.o init_tweeDEseq.o loglikGlm.o logprobs.o permtest.o probs.o zhu2.o zhu3.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/tweeDEseq.buildbin-libdir/00LOCK-tweeDEseq/00new/tweeDEseq/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'tweeDEseq'
    finding HTML links ... done
    compareCountDistributions               html  
    distPoissonTweedie                      html  
    filterCounts                            html  
    glmPT                                   html  
    gofTest                                 html  
    mlePoissonTweedie                       html  
    normalizeCounts                         html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp08ha2W/R.INSTALLaf81e881e42/tweeDEseq/man/normalizeCounts.Rd:64: file link 'edgeR' in package 'edgeR' does not exist and so has been treated as a topic
    print.mlePT                             html  
    qqchisq                                 html  
    finding level-2 HTML links ... done

    seizure                                 html  
    testShapePT                             html  
    tweeDE                                  html  
    tweeDEseq-internal                      html  
    tweeDExact                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'tweeDEseq' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c cov_wt_C.c -o cov_wt_C.o
cov_wt_C.c: In function 'cov_wt_C':
cov_wt_C.c:79:14: warning: 'wvar' may be used uninitialized in this function [-Wmaybe-uninitialized]
   free(aux), free(wvar), free(y);
              ^
cov_wt_C.c: In function 'momentEstimates_wt_C':
cov_wt_C.c:154:12: warning: 'moments' may be used uninitialized in this function [-Wmaybe-uninitialized]
   free(y), free(moments), free(aux);
            ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c init_tweeDEseq.c -o init_tweeDEseq.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c loglikGlm.c -o loglikGlm.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c logprobs.c -o logprobs.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c permtest.c -o permtest.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c probs.c -o probs.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c zhu2.c -o zhu2.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c zhu3.c -o zhu3.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o tweeDEseq.dll tmp.def cov_wt_C.o init_tweeDEseq.o loglikGlm.o logprobs.o permtest.o probs.o zhu2.o zhu3.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/tweeDEseq.buildbin-libdir/tweeDEseq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tweeDEseq' as tweeDEseq_1.30.0.zip
* DONE (tweeDEseq)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'tweeDEseq' successfully unpacked and MD5 sums checked