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INSTALL report for systemPipeR on tokay2

This page was generated on 2019-10-16 12:31:07 -0400 (Wed, 16 Oct 2019).

Package 1626/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
systemPipeR 1.18.2
Thomas Girke
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/systemPipeR
Branch: RELEASE_3_9
Last Commit: da3e435
Last Changed Date: 2019-06-21 20:48:40 -0400 (Fri, 21 Jun 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: systemPipeR
Version: 1.18.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/systemPipeR_1.18.2.tar.gz && rm -rf systemPipeR.buildbin-libdir && mkdir systemPipeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=systemPipeR.buildbin-libdir systemPipeR_1.18.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL systemPipeR_1.18.2.zip && rm systemPipeR_1.18.2.tar.gz systemPipeR_1.18.2.zip
StartedAt: 2019-10-15 20:32:23 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:34:44 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 141.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/systemPipeR_1.18.2.tar.gz && rm -rf systemPipeR.buildbin-libdir && mkdir systemPipeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=systemPipeR.buildbin-libdir systemPipeR_1.18.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL systemPipeR_1.18.2.zip && rm systemPipeR_1.18.2.tar.gz systemPipeR_1.18.2.zip
###
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install for i386

* installing *source* package 'systemPipeR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'systemPipeR'
    finding HTML links ... done
    GOHyperGAll                             html  
    INTERSECTset-class                      html  
    SYSargs-class                           html  
    SYSargs2-class                          html  
    SYSargs2Pipe-class                      html  
    SYSargs2Pipe-methods                    html  
    SYSargs2list-methods                    html  
    VENNset-class                           html  
    alignStats                              html  
    catDB-class                             html  
    catmap                                  html  
    clusterRun                              html  
    countRangeset                           html  
    featureCoverage                         html  
    featuretypeCounts                       html  
    filterDEGs                              html  
    filterVars                              html  
    genFeatures                             html  
    getQsubargs                             html  
    loadWorkflow                            html  
    mergeBamByFactor                        html  
    module                                  html  
    moduleload                              html  
    olBarplot                               html  
    output_update                           html  
    overLapper                              html  
    plotfeatureCoverage                     html  
    plotfeaturetypeCounts                   html  
    predORF                                 html  
    preprocessReads                         html  
    qsubRun                                 html  
    readComp                                html  
    renderWF                                html  
    returnRPKM                              html  
    runCommandline                          html  
    runDiff                                 html  
    run_DESeq2                              html  
    run_edgeR                               html  
    run_track                               html  
    scaleRanges                             html  
    seeFastq                                html  
    subsetWF                                html  
    symLink2bam                             html  
    sysargs                                 html  
    systemArgs                              html  
    targets.as.df                           html  
    variantReport                           html  
    vennPlot                                html  
    writeTargetsRef                         html  
    writeTargetsout                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'systemPipeR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'systemPipeR' as systemPipeR_1.18.2.zip
* DONE (systemPipeR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'systemPipeR' successfully unpacked and MD5 sums checked