Jeffrey T. Leek
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/sva |
| Branch: RELEASE_3_9 |
| Last Commit: 1b82867 |
| Last Changed Date: 2019-05-22 11:08:55 -0400 (Wed, 22 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:25:47 -0400 (Wed, 16 Oct 2019).
| Package 1613/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| sva 3.32.1 Jeffrey T. Leek
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: sva |
| Version: 3.32.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sva_3.32.1.tar.gz && rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sva.buildbin-libdir sva_3.32.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sva_3.32.1.zip && rm sva_3.32.1.tar.gz sva_3.32.1.zip |
| StartedAt: 2019-10-15 19:30:16 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:31:09 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 52.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sva_3.32.1.tar.gz && rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sva.buildbin-libdir sva_3.32.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sva_3.32.1.zip && rm sva_3.32.1.tar.gz sva_3.32.1.zip
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install for i386
* installing *source* package 'sva' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sva.c -o sva.o
sva.c:30:1: warning: missing braces around initializer [-Wmissing-braces]
};
^
sva.c:30:1: warning: (near initialization for 'callMethods[1]') [-Wmissing-braces]
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o sva.dll tmp.def sva.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sva.buildbin-libdir/00LOCK-sva/00new/sva/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'sva'
finding HTML links ... done
ComBat html
empirical.controls html
f.pvalue html
fstats html
fsva html
irwsva.build html
num.sv html
psva html
qsva html
read.degradation.matrix html
ssva html
sva html
sva.check html
sva_network html
svaseq html
twostepsva.build html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'sva' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sva.c -o sva.o
sva.c:30:1: warning: missing braces around initializer [-Wmissing-braces]
};
^
sva.c:30:1: warning: (near initialization for 'callMethods[1]') [-Wmissing-braces]
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o sva.dll tmp.def sva.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/sva.buildbin-libdir/sva/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sva' as sva_3.32.1.zip
* DONE (sva)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'sva' successfully unpacked and MD5 sums checked