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INSTALL report for sangerseqR on tokay2

This page was generated on 2019-10-16 12:29:14 -0400 (Wed, 16 Oct 2019).

Package 1452/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sangerseqR 1.20.0
Jonathon Hill
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/sangerseqR
Branch: RELEASE_3_9
Last Commit: da60756
Last Changed Date: 2019-05-02 11:53:47 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: sangerseqR
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sangerseqR_1.20.0.tar.gz && rm -rf sangerseqR.buildbin-libdir && mkdir sangerseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sangerseqR.buildbin-libdir sangerseqR_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sangerseqR_1.20.0.zip && rm sangerseqR_1.20.0.tar.gz sangerseqR_1.20.0.zip
StartedAt: 2019-10-15 19:34:43 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:35:51 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 67.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/sangerseqR_1.20.0.tar.gz && rm -rf sangerseqR.buildbin-libdir && mkdir sangerseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sangerseqR.buildbin-libdir sangerseqR_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL sangerseqR_1.20.0.zip && rm sangerseqR_1.20.0.tar.gz sangerseqR_1.20.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100 1208k  100 1208k    0     0  15.7M      0 --:--:-- --:--:-- --:--:-- 17.3M

install for i386

* installing *source* package 'sangerseqR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sangerseqR'
    finding HTML links ... done
    PolyPeakParser                          html  
    abif-class                              html  
    chromatogram                            html  
    makeBaseCalls                           html  
    read.abif                               html  
    read.scf                                html  
    readsangerseq                           html  
    sangerseq-class                         html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpaq5VsK/R.INSTALL17ec7889890/sangerseqR/man/sangerseq-class.Rd:36: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpaq5VsK/R.INSTALL17ec7889890/sangerseqR/man/sangerseq-class.Rd:39: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
    sangerseqAccessors                      html  
    finding level-2 HTML links ... done

    sangerseqR-package                      html  
    scf-class                               html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpaq5VsK/R.INSTALL17ec7889890/sangerseqR/man/scf-class.Rd:28: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
    setAllelePhase                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sangerseqR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sangerseqR' as sangerseqR_1.20.0.zip
* DONE (sangerseqR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'sangerseqR' successfully unpacked and MD5 sums checked