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INSTALL report for runibic on malbec2

This page was generated on 2019-10-16 12:12:41 -0400 (Wed, 16 Oct 2019).

Package 1439/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
runibic 1.6.0
Patryk Orzechowski
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/runibic
Branch: RELEASE_3_9
Last Commit: a3c898e
Last Changed Date: 2019-05-02 11:54:09 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: runibic
Version: 1.6.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL runibic
StartedAt: 2019-10-15 18:53:14 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 18:53:59 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 44.4 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL runibic
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘runibic’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include -fopenmp -fpic  -g -O2  -Wall -c GlobalDefs.cpp -o GlobalDefs.o
GlobalDefs.cpp: In function ‘bool check_seed(int, int, int, const std::vector&, int, int)’:
GlobalDefs.cpp:69:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (i=0; igenes.size(); i++){
               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalDefs.cpp:76:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (i=0; igenes.size(); i++){
               ~^~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalDefs.cpp: In function ‘void block_init(int, int, int, BicBlock*, std::vector&, std::vector&, std::vector&, int, int*, std::vector&, Params*, std::vector >&, std::vector >*)’:
GlobalDefs.cpp:138:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (auto i = 0; i < (*inputData)[t0].size() ;i++){
                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~
GlobalDefs.cpp:152:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(auto i=0;i<(*inputData)[j].size();i++)
                  ~^~~~~~~~~~~~~~~~~~~~~~~
GlobalDefs.cpp:117:7: warning: unused variable ‘colNum’ [-Wunused-variable]
   int colNum = gParameters.ColNumber;
       ^~~~~~
GlobalDefs.cpp: In function ‘std::vector getGenesFullLCS(const std::vector&, const std::vector&)’:
GlobalDefs.cpp:240:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(auto i=0;i&, std::vector&, std::vector >&)’:
GlobalDefs.cpp:336:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (auto i=0; i&, std::vector&, std::vector&, int, int*, std::vector&, Params*, std::vector >&, std::vector >*)’:
GlobalDefs.cpp:192:15: warning: ‘pvalue’ may be used uninitialized in this function [-Wmaybe-uninitialized]
         pvalue=pvalue+poisson;
         ~~~~~~^~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include -fopenmp -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c fib.c -o fib.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include -fopenmp -fpic  -g -O2  -Wall -c runibic.cpp -o runibic.o
runibic.cpp: In function ‘Rcpp::List calculateLCS(Rcpp::IntegerMatrix, bool)’:
runibic.cpp:329:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (auto i = 0; i < discreteInputData.size(); i++) {
                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
runibic.cpp:358:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(auto i = 0; i < out.size(); i++)
                   ~~^~~~~~~~~~~~
runibic.cpp: In function ‘Rcpp::List cluster(Rcpp::IntegerMatrix, Rcpp::IntegerMatrix, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, int, int)’:
runibic.cpp:417:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (auto i = 0; i < discreteInputData.size(); i++) {
                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
runibic.cpp:498:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(k = 0; k < components; k++) {
                ~~^~~~~~~~~~~~
runibic.cpp:507:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if(components > vecGenes.size())
        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
runibic.cpp:513:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (auto ki=0; ki < vecGenes.size() ; ki++) {
                     ~~~^~~~~~~~~~~~~~~~~
runibic.cpp:567:13: warning: unused variable ‘temp’ [-Wunused-variable]
         int temp;
             ^~~~
runibic.cpp:597:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (auto i = 0; i < discreteInputData[vecGenes[0]].size() ;i++){
                      ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
runibic.cpp:621:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for (auto i = 0; i < discreteInputData[ki].size() ;i++){
                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
runibic.cpp:700:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (arrBlocks.size() == gParameters.SchBlock)
         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
runibic.cpp:719:12: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   while (i < arrBlocks.size() && j < n) {
          ~~^~~~~~~~~~~~~~~~~~
runibic.cpp:755:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(auto ind =0; ind