Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

CHECK report for ropls on tokay2

This page was generated on 2019-10-16 12:33:37 -0400 (Wed, 16 Oct 2019).

Package 1409/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ropls 1.16.0
Etienne A. Thevenot
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/ropls
Branch: RELEASE_3_9
Last Commit: f51a7c1
Last Changed Date: 2019-05-02 11:53:56 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ropls
Version: 1.16.0
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ropls.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings ropls_1.16.0.tar.gz
StartedAt: 2019-10-16 06:45:59 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 06:47:44 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 104.8 seconds
RetCode: 0
Status:  OK  
CheckDir: ropls.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ropls.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings ropls_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/ropls.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ropls/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ropls' version '1.16.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ropls' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... NOTE
Warning: no function found corresponding to methods exports from 'ropls' for: 'residuals'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... NOTE
Warning: no function found corresponding to methods exports from 'ropls' for: 'residuals'

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.9-bioc/meat/ropls.Rcheck/00check.log'
for details.



Installation output

ropls.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ropls_1.16.0.tar.gz && rm -rf ropls.buildbin-libdir && mkdir ropls.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ropls.buildbin-libdir ropls_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ropls_1.16.0.zip && rm ropls_1.16.0.tar.gz ropls_1.16.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1297k  100 1297k    0     0  14.0M      0 --:--:-- --:--:-- --:--:-- 15.4M

install for i386

* installing *source* package 'ropls' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ropls'
    finding HTML links ... done
    aminoacids                              html  
    cellulose                               html  
    checkW4M                                html  
    coef                                    html  
    cornell                                 html  
    fitted                                  html  
    foods                                   html  
    fromW4M                                 html  
    getEset                                 html  
    getLoadingMN                            html  
    getPcaVarVn                             html  
    getScoreMN                              html  
    getSubsetVi                             html  
    getSummaryDF                            html  
    getVipVn                                html  
    getWeightMN                             html  
    imageF                                  html  
    linnerud                                html  
    lowarp                                  html  
    mark                                    html  
    opls-class                              html  
    opls                                    html  
    plot                                    html  
    predict                                 html  
    print                                   html  
    residuals                               html  
    ropls-package                           html  
    sacurine                                html  
    show                                    html  
    strF                                    html  
    tested                                  html  
    toW4M                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ropls' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ropls' as ropls_1.16.0.zip
* DONE (ropls)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ropls' successfully unpacked and MD5 sums checked

Tests output


Example timings

ropls.Rcheck/examples_i386/ropls-Ex.timings

nameusersystemelapsed
checkW4M0.250.001.30
coef0.690.040.72
fitted0.960.000.96
fromW4M0.190.000.19
getEset0.670.000.67
getLoadingMN0.50.00.5
getPcaVarVn0.10.00.1
getScoreMN0.480.000.48
getSubsetVi0.060.000.06
getSummaryDF0.470.000.47
getVipVn0.460.000.46
getWeightMN0.460.000.47
imageF0.160.000.15
opls-class1.970.012.17
opls2.750.022.99
plot1.640.031.70
predict0.060.000.06
print0.50.00.5
residuals0.320.010.33
ropls-package2.230.072.38
show0.480.000.48
strF0.020.010.03
tested0.050.020.06
toW4M0.170.000.35

ropls.Rcheck/examples_x64/ropls-Ex.timings

nameusersystemelapsed
checkW4M0.140.000.15
coef0.630.000.62
fitted1.010.021.05
fromW4M0.140.000.14
getEset0.600.020.61
getLoadingMN0.680.000.69
getPcaVarVn0.100.000.09
getScoreMN0.700.000.71
getSubsetVi0.080.000.08
getSummaryDF0.580.000.57
getVipVn0.760.020.78
getWeightMN0.830.000.93
imageF0.140.010.15
opls-class2.470.032.74
opls3.250.043.36
plot1.940.041.98
predict0.090.000.09
print0.850.000.85
residuals0.360.020.37
ropls-package2.540.002.55
show0.810.000.81
strF0.020.000.01
tested0.090.000.10
toW4M0.170.000.19