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INSTALL report for recount on tokay2

This page was generated on 2019-10-16 12:36:25 -0400 (Wed, 16 Oct 2019).

Package 1345/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
recount 1.10.13
Leonardo Collado-Torres
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/recount
Branch: RELEASE_3_9
Last Commit: b248c65
Last Changed Date: 2019-09-03 11:55:25 -0400 (Tue, 03 Sep 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: recount
Version: 1.10.13
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/recount_1.10.13.tar.gz && rm -rf recount.buildbin-libdir && mkdir recount.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=recount.buildbin-libdir recount_1.10.13.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL recount_1.10.13.zip && rm recount_1.10.13.tar.gz recount_1.10.13.zip
StartedAt: 2019-10-15 21:08:10 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 21:09:50 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 99.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/recount_1.10.13.tar.gz && rm -rf recount.buildbin-libdir && mkdir recount.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=recount.buildbin-libdir recount_1.10.13.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL recount_1.10.13.zip && rm recount_1.10.13.tar.gz recount_1.10.13.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 5763k  100 5763k    0     0  50.2M      0 --:--:-- --:--:-- --:--:-- 53.6M

install for i386

* installing *source* package 'recount' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'recount'
    finding HTML links ... done
    abstract_search                         html  
    add_metadata                            html  
    add_predictions                         html  
    all_metadata                            html  
    browse_study                            html  
    coverage_matrix                         html  
    download_retry                          html  
    download_study                          html  
    expressed_regions                       html  
    find_geo                                html  
    geo_characteristics                     html  
    geo_info                                html  
    getRPKM                                 html  
    getTPM                                  html  
    read_counts                             html  
    recount-package                         html  
    recount_abstract                        html  
    recount_exons                           html  
    recount_genes                           html  
    recount_url                             html  
    reproduce_ranges                        html  
    rse_gene_SRP009615                      html  
    scale_counts                            html  
    snaptron_query                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'recount' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'recount' as recount_1.10.13.zip
* DONE (recount)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'recount' successfully unpacked and MD5 sums checked