Package: reb

Version: 1.62.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/reb_1.62.0.tar.gz && rm -rf reb.buildbin-libdir && mkdir reb.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=reb.buildbin-libdir reb_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL reb_1.62.0.zip && rm reb_1.62.0.tar.gz reb_1.62.0.zip

StartedAt: 2019-10-15 19:13:18 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 19:14:03 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 45.5 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/reb_1.62.0.tar.gz && rm -rf reb.buildbin-libdir && mkdir reb.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=reb.buildbin-libdir reb_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL reb_1.62.0.zip && rm reb_1.62.0.tar.gz reb_1.62.0.zip
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install for i386

* installing *source* package 'reb' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c movbin.c -o movbin.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o reb.dll tmp.def movbin.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/reb.buildbin-libdir/00LOCK-reb/00new/reb/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'reb'
    finding HTML links ... done
    Hs.arms                                 html  
    absMax                                  html  
    buildChromCytoband                      html  
    buildChromMap                           html  
    cset2band                               html  
    fromRevIsh                              html  
    isAbnormal                              html  
    mcr.eset                                html  
    movbin                                  html  
    movt                                    html  
    naMean                                  html  
    regmap                                  html  
    revish                                  html  
    rmAmbigMappings                         html  
    smoothByRegion                          html  
    summarizeByRegion                       html  
    tBinomTest                              html  
    writeGFF3                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'reb' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c movbin.c -o movbin.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o reb.dll tmp.def movbin.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/reb.buildbin-libdir/reb/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'reb' as reb_1.62.0.zip
* DONE (reb)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'reb' successfully unpacked and MD5 sums checked