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INSTALL report for rCGH on tokay2

This page was generated on 2019-10-16 12:33:36 -0400 (Wed, 16 Oct 2019).

Package 1326/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rCGH 1.14.0
Frederic Commo
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/rCGH
Branch: RELEASE_3_9
Last Commit: 9d50f3a
Last Changed Date: 2019-05-02 11:53:56 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: rCGH
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/rCGH_1.14.0.tar.gz && rm -rf rCGH.buildbin-libdir && mkdir rCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rCGH.buildbin-libdir rCGH_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL rCGH_1.14.0.zip && rm rCGH_1.14.0.tar.gz rCGH_1.14.0.zip
StartedAt: 2019-10-15 20:30:05 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:31:34 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 88.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/rCGH_1.14.0.tar.gz && rm -rf rCGH.buildbin-libdir && mkdir rCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rCGH.buildbin-libdir rCGH_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL rCGH_1.14.0.zip && rm rCGH_1.14.0.tar.gz rCGH_1.14.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 61 3768k   61 2336k    0     0  6252k      0 --:--:-- --:--:-- --:--:-- 6347k
100 3768k  100 3768k    0     0  9752k      0 --:--:-- --:--:-- --:--:-- 9917k

install for i386

* installing *source* package 'rCGH' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rCGH'
    finding HTML links ... done
    AllAccessors                            html  
    EMnormalize                             html  
    adjustSignal                            html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGcAUNG/R.INSTALL18047c594532/rCGH/man/adjustSignal.Rd:79: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
    agilentDB                               html  
    byGeneTable                             html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGcAUNG/R.INSTALL18047c594532/rCGH/man/byGeneTable.Rd:36: file link 'select' in package 'AnnotationDbi' does not exist and so has been treated as a topic
    hg18                                    html  
    hg19                                    html  
    hg38                                    html  
    multiplot                               html  
    plotDensity                             html  
    plotLOH                                 html  
    plotProfile                             html  
    rCGH-Agilent-class                      html  
    rCGH-SNP6-class                         html  
    rCGH-class                              html  
    rCGH-cytoScan-class                     html  
    rCGH-generic-class                      html  
    rCGH-oncoScan-class                     html  
    rCGH-package                            html  
    readAffyCytoScan                        html  
    readAffyOncoScan                        html  
    readAffySNP6                            html  
    readAgilent                             html  
    readGeneric                             html  
    recenter                                html  
    segmentCGH                              html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGcAUNG/R.INSTALL18047c594532/rCGH/man/segmentCGH.Rd:37: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGcAUNG/R.INSTALL18047c594532/rCGH/man/segmentCGH.Rd:69: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
    setInfo                                 html  
    show-methods                            html  
    view                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpGcAUNG/R.INSTALL18047c594532/rCGH/man/view.Rd:9: file link 'shiny' in package 'shiny' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'rCGH' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rCGH' as rCGH_1.14.0.zip
* DONE (rCGH)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'rCGH' successfully unpacked and MD5 sums checked