predictionet 1.30.0
Benjamin Haibe-Kains
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/predictionet |
| Branch: RELEASE_3_9 |
| Last Commit: 7e77793 |
| Last Changed Date: 2019-05-02 11:53:31 -0400 (Thu, 02 May 2019) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | [ OK ] | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | ...NOT SUPPORTED... |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL predictionet
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘predictionet’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c foo_mrmr.cpp -o foo_mrmr.o
foo_mrmr.cpp: In function ‘double get_correlation(double*, int*, int, int, int)’:
foo_mrmr.cpp:13:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< size; ++i ) {
~^~~~~~
foo_mrmr.cpp:23:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< size; ++i ) {
~^~~~~~
foo_mrmr.cpp: In function ‘void build_mim_subset(double*, double*, int*, int, int, int*, int)’:
foo_mrmr.cpp:50:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0; i< size_subset; ++i){
~^~~~~~~~~~~~~
foo_mrmr.cpp:51:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=0; j< nvar; ++j){
~^~~~~~
foo_mrmr.cpp:57:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0; i< nvar; ++i){
~^~~~~~
foo_mrmr.cpp:59:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=i+1; j< nvar; ++j){
~^~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c mrnet_adapted.cpp -o mrnet_adapted.o
mrnet_adapted.cpp: In function ‘SEXPREC* mrnet_adapted(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
mrnet_adapted.cpp:58:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0;i < *nsample; ++i){
~~^~~~~~~~~~
mrnet_adapted.cpp:103:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( int l=0; l&, tree&)’:
mrnet_ensemble_standalone.cpp:24:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=0;j< length_vec;++j){
~^~~~~~~~~~~~
mrnet_ensemble_standalone.cpp:42:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=0;j< length_vec;++j){
~^~~~~~~~~~~~
mrnet_ensemble_standalone.cpp:47:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=0;j< (res.depth(it_main)-1);++j){
~^~~~~~~~~~~~~~~~~~~~~~~~
mrnet_ensemble_standalone.cpp:60:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=0;j< length_vec;++j){
~^~~~~~~~~~~~
mrnet_ensemble_standalone.cpp:65:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=0;j< length_vec && equiv;++j){
~^~~~~~~~~~~~
mrnet_ensemble_standalone.cpp: In function ‘int verify_equivalentset_nparents(tree&, tree::pre_order_iterator, tree::pre_order_iterator, tree&, int)’:
mrnet_ensemble_standalone.cpp:111:7: warning: unused variable ‘found’ [-Wunused-variable]
bool found=false;
^~~~~
mrnet_ensemble_standalone.cpp: In function ‘int verify_equivalentset(tree&, tree::pre_order_iterator, tree::pre_order_iterator, int, int*, int*)’:
mrnet_ensemble_standalone.cpp:223:6: warning: variable ‘to_remove’ set but not used [-Wunused-but-set-variable]
int to_remove[number_leafs];
^~~~~~~~~
mrnet_ensemble_standalone.cpp:283:6: warning: unused variable ‘rootdepth’ [-Wunused-variable]
int rootdepth=tr.depth(it);
^~~~~~~~~
mrnet_ensemble_standalone.cpp: In function ‘void build_tree_int(tree&, tree::pre_order_iterator, tree::pre_order_iterator, int*, int, int)’:
mrnet_ensemble_standalone.cpp:304:6: warning: unused variable ‘rootdepth’ [-Wunused-variable]
int rootdepth=tr.depth(it);
^~~~~~~~~
mrnet_ensemble_standalone.cpp: In function ‘void bootstrap_mrmr_fix(double&, double&, double*, int*, int, int, int, int, int, int, int, int*)’:
mrnet_ensemble_standalone.cpp:384:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=1;i<= nsamples;++i){
~^~~~~~~~~~~
mrnet_ensemble_standalone.cpp:377:16: warning: unused variable ‘boot_val’ [-Wunused-variable]
double *mim, *boot_val;
^~~~~~~~
mrnet_ensemble_standalone.cpp: In function ‘void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*)’:
mrnet_ensemble_standalone.cpp:414:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0; k< rep_boot; ++k){
~^~~~~~~~~~
mrnet_ensemble_standalone.cpp:417:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=1;i<= size_boot;++i){
~^~~~~~~~~~~~
mrnet_ensemble_standalone.cpp:426:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0;i< rep_boot;++i){
~^~~~~~~~~~
mrnet_ensemble_standalone.cpp:433:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0;i< rep_boot;++i){
~^~~~~~~~~~
mrnet_ensemble_standalone.cpp: In function ‘void bootstrap_tree(tree&, tree&, double*, int*, int, int, int)’:
mrnet_ensemble_standalone.cpp:507:7: warning: unused variable ‘cnt_back’ [-Wunused-variable]
int cnt_back=cnt2;
^~~~~~~~
mrnet_ensemble_standalone.cpp:442:7: warning: unused variable ‘nsub’ [-Wunused-variable]
int nsub, *prev_sel,nsamples_boot=nsamples,*to_remove;
^~~~
mrnet_ensemble_standalone.cpp: In function ‘double mrnet_onegene(double*, int, int, int*, int, int)’:
mrnet_ensemble_standalone.cpp:569:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=0;j< nbvar; j++){
~^~~~~~~
mrnet_ensemble_standalone.cpp:558:15: warning: variable ‘jmax’ set but not used [-Wunused-but-set-variable]
unsigned int jmax;
^~~~
mrnet_ensemble_standalone.cpp:560:9: warning: unused variable ‘max_val’ [-Wunused-variable]
double max_val=-1000;
^~~~~~~
mrnet_ensemble_standalone.cpp: In function ‘void mrmr_ensemble_one_gene(tree&, tree::pre_order_iterator, double*, int*, int, int, int, int, int, int, double)’:
mrnet_ensemble_standalone.cpp:600:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k< max_elements ;++k){
~^~~~~~~~~~~~~~
mrnet_ensemble_standalone.cpp:658:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (unsigned int i=0;imax_mrmr){
~^~~~~~~~~~~~~
mrnet_ensemble_standalone.cpp:689:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k< n;++k){
~^~~
mrnet_ensemble_standalone.cpp:586:48: warning: unused variable ‘nprev_sel’ [-Wunused-variable]
int *nsub, *prev_sel,nsamples_boot=nsamples, nprev_sel=0;
^~~~~~~~~
mrnet_ensemble_standalone.cpp:587:10: warning: variable ‘res_vec’ set but not used [-Wunused-but-set-variable]
double *res_vec, *vec_mean, *vec_sort, *vec_sd, *vec_local_max_mean, *vec_local_max_sd;;
^~~~~~~
mrnet_ensemble_standalone.cpp: In function ‘SEXPREC* mrmr_ensemble(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
mrnet_ensemble_standalone.cpp:760:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0;i< *npredn;++i){
~^~~~~~~~~
mrnet_ensemble_standalone.cpp:799:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k&, tree::pre_order_iterator, double*, int*, int, int, int, int, int, int, double)’:
mrnet_ensemble_standalone.cpp:860:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k< max_elements ;++k){
~^~~~~~~~~~~~~~
mrnet_ensemble_standalone.cpp:904:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (unsigned int i=0;i<=max_depth;++i){
~^~~~~~~~~~~
mrnet_ensemble_standalone.cpp:912:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k< n;++k){
~^~~
mrnet_ensemble_standalone.cpp:915:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k<=max(res_tmp_new.depth(it_local),max_depth) ;++k){
~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mrnet_ensemble_standalone.cpp:919:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k< n;++k){
~^~~
mrnet_ensemble_standalone.cpp:848:48: warning: unused variable ‘tmp_val_max_ind’ [-Wunused-variable]
int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete;
^~~~~~~~~~~~~~~
mrnet_ensemble_standalone.cpp:848:66: warning: unused variable ‘prev_sel_tmp’ [-Wunused-variable]
int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete;
^~~~~~~~~~~~
mrnet_ensemble_standalone.cpp:849:21: warning: unused variable ‘vec_sort’ [-Wunused-variable]
double *vec_mean, *vec_sort, *vec_sd, *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr;
^~~~~~~~
mrnet_ensemble_standalone.cpp:849:63: warning: variable ‘vec_local_max_sd’ set but not used [-Wunused-but-set-variable]
double *vec_mean, *vec_sort, *vec_sd, *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr;
^~~~~~~~~~~~~~~~
mrnet_ensemble_standalone.cpp: In function ‘SEXPREC* mrmr_ensemble_remove(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
mrnet_ensemble_standalone.cpp:1029:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0;i< *npredn;++i){
~^~~~~~~~~
mrnet_ensemble_standalone.cpp:1066:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k