networkBMA 2.24.0
Ka Yee Yeung
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/networkBMA |
| Branch: RELEASE_3_9 |
| Last Commit: 857e2df |
| Last Changed Date: 2019-05-02 11:53:37 -0400 (Thu, 02 May 2019) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ ERROR ] | ERROR | skipped | skipped | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/networkBMA_2.24.0.tar.gz && rm -rf networkBMA.buildbin-libdir && mkdir networkBMA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=networkBMA.buildbin-libdir networkBMA_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL networkBMA_2.24.0.zip && rm networkBMA_2.24.0.tar.gz networkBMA_2.24.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 1318k 100 1318k 0 0 1554k 0 --:--:-- --:--:-- --:--:-- 1566k
install for i386
* installing *source* package 'networkBMA' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -DWIN=1 -DUSE_RBLAS -I./include -I. -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c MurmurHash3.cpp -o MurmurHash3.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -DWIN=1 -DUSE_RBLAS -I./include -I. -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -DWIN=1 -DUSE_RBLAS -I./include -I. -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c ScanBMA_full.cpp -o ScanBMA_full.o
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/unordered_set:35:0,
from ScanBMA_full.cpp:18:
C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options.
#error This file requires compiler and library support for the \
^
ScanBMA_full.cpp: In function 'const List ScanBMA_BIC(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, double)':
ScanBMA_full.cpp:137:45: warning: 'const arma::mtOp arma::sort_index(const arma::Base&, arma::uword) [with T1 = arma::Mat; typename T1::elem_type = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:43) [-Wdeprecated-declarations]
arma::uvec pord = sort_index(priorProbs, 1);
^
ScanBMA_full.cpp:19:28: error: 'unordered_set' is not a member of 'std'
#define UNORDERED_SET_TYPE std::unordered_set
^
ScanBMA_full.cpp:161:3: note: in expansion of macro 'UNORDERED_SET_TYPE'
UNORDERED_SET_TYPE checkedModels;
^
ScanBMA_full.cpp:19:28: note: suggested alternative:
#define UNORDERED_SET_TYPE std::unordered_set
^
ScanBMA_full.cpp:161:3: note: in expansion of macro 'UNORDERED_SET_TYPE'
UNORDERED_SET_TYPE checkedModels;
^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/tr1/unordered_set:42:0,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/platform/compiler.h:181,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/r/headers.h:59,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:29,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:26,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
from ScanBMA_full.cpp:5:
C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/tr1/unordered_set.h:173:11: note: 'std::tr1::unordered_set'
class unordered_set
^
ScanBMA_full.cpp:161:33: error: expected primary-expression before '>' token
UNORDERED_SET_TYPE checkedModels;
^
ScanBMA_full.cpp:161:35: error: 'checkedModels' was not declared in this scope
UNORDERED_SET_TYPE checkedModels;
^
ScanBMA_full.cpp: In function 'const List BMA_Diff_BIC(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::IntegerVector, bool, bool, Rcpp::IntegerVector, Rcpp::IntegerVector, double, double)':
ScanBMA_full.cpp:328:43: warning: 'const arma::mtOp arma::sort_index(const arma::Base&, arma::uword) [with T1 = arma::Mat; typename T1::elem_type = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:43) [-Wdeprecated-declarations]
arma::uvec pord = sort_index(priorProbs, 1);
^
ScanBMA_full.cpp: In function 'const List ScanBMA_g(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, double, double)':
ScanBMA_full.cpp:421:45: warning: 'const arma::mtOp arma::sort_index(const arma::Base&, arma::uword) [with T1 = arma::Mat; typename T1::elem_type = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:43) [-Wdeprecated-declarations]
arma::uvec pord = sort_index(priorProbs, 1);
^
ScanBMA_full.cpp:19:28: error: 'unordered_set' is not a member of 'std'
#define UNORDERED_SET_TYPE std::unordered_set
^
ScanBMA_full.cpp:445:3: note: in expansion of macro 'UNORDERED_SET_TYPE'
UNORDERED_SET_TYPE checkedModels;
^
ScanBMA_full.cpp:19:28: note: suggested alternative:
#define UNORDERED_SET_TYPE std::unordered_set
^
ScanBMA_full.cpp:445:3: note: in expansion of macro 'UNORDERED_SET_TYPE'
UNORDERED_SET_TYPE checkedModels;
^
In file included from C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/tr1/unordered_set:42:0,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/platform/compiler.h:181,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/r/headers.h:59,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:29,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:26,
from C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
from ScanBMA_full.cpp:5:
C:/Rtools/mingw_32/i686-w64-mingw32/include/c++/tr1/unordered_set.h:173:11: note: 'std::tr1::unordered_set'
class unordered_set
^
ScanBMA_full.cpp:445:33: error: expected primary-expression before '>' token
UNORDERED_SET_TYPE checkedModels;
^
ScanBMA_full.cpp:445:35: error: 'checkedModels' was not declared in this scope
UNORDERED_SET_TYPE checkedModels;
^
ScanBMA_full.cpp: In function 'const List BMA_Diff_g(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, double, Rcpp::IntegerVector, bool, bool, Rcpp::IntegerVector, Rcpp::IntegerVector, double, double)':
ScanBMA_full.cpp:614:43: warning: 'const arma::mtOp arma::sort_index(const arma::Base&, arma::uword) [with T1 = arma::Mat; typename T1::elem_type = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:43) [-Wdeprecated-declarations]
arma::uvec pord = sort_index(priorProbs, 1);
^
make: *** [ScanBMA_full.o] Error 1
ERROR: compilation failed for package 'networkBMA'
* removing 'C:/Users/biocbuild/bbs-3.9-bioc/meat/networkBMA.buildbin-libdir/networkBMA'