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INSTALL report for ndexr on tokay2

This page was generated on 2019-10-16 12:38:34 -0400 (Wed, 16 Oct 2019).

Package 1090/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ndexr 1.6.1
Florian Auer
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/ndexr
Branch: RELEASE_3_9
Last Commit: bba19ab
Last Changed Date: 2019-10-14 12:21:11 -0400 (Mon, 14 Oct 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  ERROR  OK 

Summary

Package: ndexr
Version: 1.6.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ndexr_1.6.1.tar.gz && rm -rf ndexr.buildbin-libdir && mkdir ndexr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ndexr.buildbin-libdir ndexr_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ndexr_1.6.1.zip && rm ndexr_1.6.1.tar.gz ndexr_1.6.1.zip
StartedAt: 2019-10-15 19:41:44 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:42:54 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 70.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ndexr_1.6.1.tar.gz && rm -rf ndexr.buildbin-libdir && mkdir ndexr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ndexr.buildbin-libdir ndexr_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ndexr_1.6.1.zip && rm ndexr_1.6.1.tar.gz ndexr_1.6.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  374k  100  374k    0     0  5305k      0 --:--:-- --:--:-- --:--:-- 5943k

install for i386

* installing *source* package 'ndexr' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ndexr'
    finding HTML links ... done
    listToRCode                             html  
    ndex_conf_header                        html  
    ndex_config                             html  
    ndex_connect                            html  
    ndex_create_group                       html  
    ndex_create_network                     html  
    ndex_create_user                        html  
    ndex_delete_group                       html  
    ndex_delete_network                     html  
    ndex_delete_user                        html  
    ndex_find_groups                        html  
    ndex_find_networks                      html  
    ndex_find_user_byId                     html  
    ndex_find_user_byName                   html  
    ndex_find_users                         html  
    ndex_get_group                          html  
    ndex_get_network                        html  
    ndex_group_delete_membership            html  
    ndex_group_list_networks                html  
    ndex_group_list_users                   html  
    ndex_group_network_get_permission       html  
    ndex_group_set_membership               html  
    ndex_helper_encodeParams                html  
    ndex_helper_getApi                      html  
    ndex_helper_httpResponseHandler         html  
    ndex_internal_addAspects                html  
    ndex_network_aspect_get_metadata        html  
    ndex_network_delete_permission          html  
    ndex_network_get_aspect                 html  
    ndex_network_get_metadata               html  
    ndex_network_get_permission             html  
    ndex_network_get_provenance             html  
    ndex_network_get_summary                html  
    ndex_network_set_systemProperties       html  
    ndex_network_update_aspect              html  
    ndex_network_update_permission          html  
    ndex_network_update_profile             html  
    ndex_rest_DELETE                        html  
    ndex_rest_GET                           html  
    ndex_rest_POST                          html  
    ndex_rest_PUT                           html  
    ndex_update_group                       html  
    ndex_update_network                     html  
    ndex_update_user                        html  
    ndex_user_change_password               html  
    ndex_user_forgot_password               html  
    ndex_user_get_networksummary            html  
    ndex_user_get_showcase                  html  
    ndex_user_list_groups                   html  
    ndex_user_list_permissions              html  
    ndex_user_mail_password                 html  
    ndex_user_show_group                    html  
    ndex_user_show_permission               html  
    ndex_verify_user                        html  
    ndexr-package                           html  
    ngraph_toRCX                            html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnWLXg/R.INSTALL1f6c2893b07/ndexr/man/ngraph_toRCX.Rd:153: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    print.NDExConnection                    html  
    print.RCX                               html  
    rcx_asNewNetwork                        html  
    rcx_aspect_toJSON                       html  
    rcx_fromJSON                            html  
    rcx_new                                 html  
    rcx_toJSON                              html  
    rcx_toNGraph                            html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnWLXg/R.INSTALL1f6c2893b07/ndexr/man/rcx_toNGraph.Rd:27: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnWLXg/R.INSTALL1f6c2893b07/ndexr/man/rcx_toNGraph.Rd:163: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    rcx_toRCXgraph                          html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnWLXg/R.INSTALL1f6c2893b07/ndexr/man/rcx_toRCXgraph.Rd:31: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnWLXg/R.INSTALL1f6c2893b07/ndexr/man/rcx_toRCXgraph.Rd:148: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
    rcx_updateMetaData                      html  
    rcxgraph_toRCX                          html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnWLXg/R.INSTALL1f6c2893b07/ndexr/man/rcxgraph_toRCX.Rd:132: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ndexr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ndexr' as ndexr_1.6.1.zip
* DONE (ndexr)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ndexr' successfully unpacked and MD5 sums checked