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INSTALL report for mnem on tokay2

This page was generated on 2019-10-16 12:44:28 -0400 (Wed, 16 Oct 2019).

Package 1030/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mnem 1.0.0
Martin Pirkl
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/mnem
Branch: RELEASE_3_9
Last Commit: 9488f95
Last Changed Date: 2019-05-02 11:54:16 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: mnem
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/mnem_1.0.0.tar.gz && rm -rf mnem.buildbin-libdir && mkdir mnem.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mnem.buildbin-libdir mnem_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL mnem_1.0.0.zip && rm mnem_1.0.0.tar.gz mnem_1.0.0.zip
StartedAt: 2019-10-15 21:11:04 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 21:12:25 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 80.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/mnem_1.0.0.tar.gz && rm -rf mnem.buildbin-libdir && mkdir mnem.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mnem.buildbin-libdir mnem_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL mnem_1.0.0.zip && rm mnem_1.0.0.tar.gz mnem_1.0.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1950k  100 1950k    0     0  12.8M      0 --:--:-- --:--:-- --:--:-- 13.5M

install for i386

* installing *source* package 'mnem' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c mm.cpp -o mm.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o mnem.dll tmp.def RcppExports.o mm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/mnem.buildbin-libdir/00LOCK-mnem/00new/mnem/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mnem'
    finding HTML links ... done
    app                                     html  
    bootstrap                               html  
    clustNEM                                html  
    createApp                               html  
    fitacc                                  html  
    fuzzyindex                              html  
    getAffinity                             html  
    getIC                                   html  
    hamSim                                  html  
    mnem                                    html  
    mnemh                                   html  
    mnemk                                   html  
    plot.bootmnem                           html  
    plot.mnem                               html  
    plot.mnemsim                            html  
    plotConvergence                         html  
    plotDnf                                 html  
    simData                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'mnem' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c mm.cpp -o mm.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o mnem.dll tmp.def RcppExports.o mm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/mnem.buildbin-libdir/mnem/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mnem' as mnem_1.0.0.zip
* DONE (mnem)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'mnem' successfully unpacked and MD5 sums checked