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BUILD BIN report for microbiome on tokay2

This page was generated on 2019-10-16 12:39:11 -0400 (Wed, 16 Oct 2019).

Package 996/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
microbiome 1.6.0
Leo Lahti
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/microbiome
Branch: RELEASE_3_9
Last Commit: 4a7a3ac
Last Changed Date: 2019-05-02 11:54:08 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: microbiome
Version: 1.6.0
Command: rm -rf microbiome.buildbin-libdir && mkdir microbiome.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microbiome.buildbin-libdir microbiome_1.6.0.tar.gz
StartedAt: 2019-10-16 09:40:09 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 09:41:03 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 54.1 seconds
RetCode: 0
Status:  OK  
PackageFile: microbiome_1.6.0.zip
PackageFileSize: 1.27 MiB

Command output

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###
### Running command:
###
###   rm -rf microbiome.buildbin-libdir && mkdir microbiome.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microbiome.buildbin-libdir microbiome_1.6.0.tar.gz
###
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install for i386

* installing *source* package 'microbiome' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'microbiome'
    finding HTML links ... done
    abundances                              html  
    finding level-2 HTML links ... done

    aggregate_taxa                          html  
    aggregate_top_taxa                      html  
    alpha                                   html  
    associate                               html  
    atlas1006                               html  
    baseline                                html  
    bfratio                                 html  
    bimodality                              html  
    bimodality_sarle                        html  
    boxplot_abundance                       html  
    chunk_reorder                           html  
    cmat2table                              html  
    collapse_replicates                     html  
    core                                    html  
    core_abundance                          html  
    core_heatmap                            html  
    core_matrix                             html  
    core_members                            html  
    coverage                                html  
    default_colors                          html  
    densityplot                             html  
    dietswap                                html  
    divergence                              html  
    diversities                             html  
    diversity                               html  
    dominance                               html  
    dominant                                html  
    estimate_stability                      html  
    evenness                                html  
    find_optima                             html  
    gktau                                   html  
    global                                  html  
    group_age                               html  
    group_bmi                               html  
    heat                                    html  
    hitchip.taxonomy                        html  
    hotplot                                 html  
    inequality                              html  
    intermediate_stability                  html  
    log_modulo_skewness                     html  
    low_abundance                           html  
    map_levels                              html  
    merge_taxa2                             html  
    meta                                    html  
    microbiome-package                      html  
    multimodality                           html  
    neat                                    html  
    neatsort                                html  
    noncore_abundance                       html  
    noncore_members                         html  
    peerj32                                 html  
    plot_atlas                              html  
    plot_composition                        html  
    plot_core                               html  
    plot_density                            html  
    plot_frequencies                        html  
    plot_landscape                          html  
    plot_regression                         html  
    plot_taxa_prevalence                    html  
    plot_tipping                            html  
    potential_analysis                      html  
    potential_univariate                    html  
    prevalence                              html  
    quiet                                   html  
    radial_theta                            html  
    rare_members                            html  
    rarity                                  html  
    read_biom2phyloseq                      html  
    read_csv2phyloseq                       html  
    read_mothur2phyloseq                    html  
    read_phyloseq                           html  
    readcount                               html  
    remove_samples                          html  
    remove_taxa                             html  
    richness                                html  
    summarize_phyloseq                      html  
    taxa                                    html  
    time_normalize                          html  
    time_sort                               html  
    timesplit                               html  
    top_taxa                                html  
    transform                               html  
    variable_members                        html  
    write_phyloseq                          html  
    ztransform                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'microbiome' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'microbiome' as microbiome_1.6.0.zip
* DONE (microbiome)