Package: microRNA

Version: 1.42.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/microRNA_1.42.0.tar.gz && rm -rf microRNA.buildbin-libdir && mkdir microRNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microRNA.buildbin-libdir microRNA_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL microRNA_1.42.0.zip && rm microRNA_1.42.0.tar.gz microRNA_1.42.0.zip

StartedAt: 2019-10-15 19:38:49 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 19:39:57 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 68.2 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/microRNA_1.42.0.tar.gz && rm -rf microRNA.buildbin-libdir && mkdir microRNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microRNA.buildbin-libdir microRNA_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL microRNA_1.42.0.zip && rm microRNA_1.42.0.tar.gz microRNA_1.42.0.zip
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install for i386

* installing *source* package 'microRNA' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function 'SEXPREC* longest_common_substring(SEXP)':
longest_common_substring.cpp:55:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (i == len[index] - 1) { // ignore null termination character
               ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o microRNA.dll tmp.def longest_common_substring.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/microRNA.buildbin-libdir/00LOCK-microRNA/00new/microRNA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'microRNA'
    finding HTML links ... done
    RNA2DNA                                 html  
    get_selfhyb_subseq                      html  
    hsSeqs                                  html  
    hsTargets                               html  
    matchSeeds                              html  
    mmSeqs                                  html  
    mmTargets                               html  
    s3utr                                   html  
    seedRegions                             html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'microRNA' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function 'SEXPREC* longest_common_substring(SEXP)':
longest_common_substring.cpp:55:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (i == len[index] - 1) { // ignore null termination character
               ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o microRNA.dll tmp.def longest_common_substring.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/microRNA.buildbin-libdir/microRNA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'microRNA' as microRNA_1.42.0.zip
* DONE (microRNA)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'microRNA' successfully unpacked and MD5 sums checked