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INSTALL report for miRSM on tokay2

This page was generated on 2019-10-16 12:42:13 -0400 (Wed, 16 Oct 2019).

Package 1016/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRSM 1.2.2
Junpeng Zhang
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/miRSM
Branch: RELEASE_3_9
Last Commit: 06c25e5
Last Changed Date: 2019-09-10 23:02:58 -0400 (Tue, 10 Sep 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: miRSM
Version: 1.2.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/miRSM_1.2.2.tar.gz && rm -rf miRSM.buildbin-libdir && mkdir miRSM.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=miRSM.buildbin-libdir miRSM_1.2.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL miRSM_1.2.2.zip && rm miRSM_1.2.2.tar.gz miRSM_1.2.2.zip
StartedAt: 2019-10-15 21:04:23 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 21:07:57 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 214.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/miRSM_1.2.2.tar.gz && rm -rf miRSM.buildbin-libdir && mkdir miRSM.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=miRSM.buildbin-libdir miRSM_1.2.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL miRSM_1.2.2.zip && rm miRSM_1.2.2.tar.gz miRSM_1.2.2.zip
###
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100  641k  100  641k    0     0  10.9M      0 --:--:-- --:--:-- --:--:-- 12.5M

install for i386

* installing *source* package 'miRSM' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c complex.c -o complex.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c registerDynamicSymbol.c -o registerDynamicSymbol.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o miRSM.dll tmp.def complex.o registerDynamicSymbol.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/miRSM.buildbin-libdir/00LOCK-miRSM/00new/miRSM/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'miRSM'
    finding HTML links ... done
    BRCA_genes                              html  
    ceRExp                                  html  
    cor_binary                              html  
    mRExp                                   html  
    miRExp                                  html  
    miRSM                                   html  
    miRTarget                               html  
    module_CEA                              html  
    module_Coexpress                        html  
    module_FA                               html  
    module_GFA                              html  
    module_NMF                              html  
    module_ProNet                           html  
    module_Validate                         html  
    module_WGCNA                            html  
    module_biclust                          html  
    module_clust                            html  
    module_igraph                           html  
    module_miRdistribute                    html  
    module_miRsponge                        html  
    module_miRtarget                        html  
    share_miRs                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'miRSM' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c complex.c -o complex.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c registerDynamicSymbol.c -o registerDynamicSymbol.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o miRSM.dll tmp.def complex.o registerDynamicSymbol.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/miRSM.buildbin-libdir/miRSM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'miRSM' as miRSM_1.2.2.zip
* DONE (miRSM)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'miRSM' successfully unpacked and MD5 sums checked