Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

INSTALL report for mbkmeans on tokay2

This page was generated on 2019-10-16 12:43:56 -0400 (Wed, 16 Oct 2019).

Package 932/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mbkmeans 1.0.0
Davide Risso
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/mbkmeans
Branch: RELEASE_3_9
Last Commit: 42e4066
Last Changed Date: 2019-05-02 11:54:15 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: mbkmeans
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/mbkmeans_1.0.0.tar.gz && rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mbkmeans.buildbin-libdir mbkmeans_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL mbkmeans_1.0.0.zip && rm mbkmeans_1.0.0.tar.gz mbkmeans_1.0.0.zip
StartedAt: 2019-10-15 20:14:21 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:16:49 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 147.3 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/mbkmeans_1.0.0.tar.gz && rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mbkmeans.buildbin-libdir mbkmeans_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL mbkmeans_1.0.0.zip && rm mbkmeans_1.0.0.tar.gz mbkmeans_1.0.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 19269  100 19269    0     0   319k      0 --:--:-- --:--:-- --:--:--  368k

install for i386

* installing *source* package 'mbkmeans' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/ClusterR/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/ClusterR/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:3:0:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable >, int)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/ClusterR/include/ClusterRHeader.h:837:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
         bool status;
              ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::string, std::string, int, int, bool, double, int)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/ClusterR/include/ClusterRHeader.h:1433:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
         bool status;
              ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/mbkmeans.buildbin-libdir/00LOCK-mbkmeans/00new/mbkmeans/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mbkmeans'
    finding HTML links ... done
    blocksize                               html  
    compute_wcss                            html  
    mbkmeans                                html  
    mini_batch                              html  
    predict_mini_batch                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'mbkmeans' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/ClusterR/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/ClusterR/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:3:0:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable >, int)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/ClusterR/include/ClusterRHeader.h:837:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
         bool status;
              ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::string, std::string, int, int, bool, double, int)':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/ClusterR/include/ClusterRHeader.h:1433:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
         bool status;
              ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/mbkmeans.buildbin-libdir/mbkmeans/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mbkmeans' as mbkmeans_1.0.0.zip
* DONE (mbkmeans)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'mbkmeans' successfully unpacked and MD5 sums checked