Multiple platform build/check report for BioC 3.9 - CHECK report for maSigPro on celaya2

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings maSigPro_1.56.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/maSigPro.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.56.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
ISOdesign     22.979  0.528  23.528
tableDS       22.180  0.844  23.112
ISOdata       21.924  1.003  22.939
getDSPatterns 22.039  0.850  22.983
seeDS         21.955  0.889  22.933
IsoModel      21.746  0.604  22.522
getDS         21.392  0.874  22.353
PodiumChange  20.447  0.790  21.239
IsoPlot       19.981  0.807  20.836
T.fit         10.205  0.094  10.301
maSigPro       7.307  0.088   7.433
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL maSigPro
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘maSigPro’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘maSigPro.Rnw’ 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output

Example timings

name	user	system	elapsed
ISOdata	21.924	1.003	22.939
ISOdesign	22.979	0.528	23.528
IsoModel	21.746	0.604	22.522
IsoPlot	19.981	0.807	20.836
NBdata	0.002	0.002	0.004
NBdesign	0.009	0.002	0.012
PlotGroups	0.043	0.007	0.059
PlotProfiles	0.014	0.006	0.027
PodiumChange	20.447	0.790	21.239
T.fit	10.205	0.094	10.301
average.rows	0.004	0.000	0.005
data.abiotic	0.005	0.002	0.007
edesign.abiotic	0.003	0.002	0.004
edesignCT	0.002	0.002	0.003
edesignDR	0.002	0.002	0.004
get.siggenes	4.826	0.045	4.872
getDS	21.392	0.874	22.353
getDSPatterns	22.039	0.850	22.983
i.rank	0.001	0.000	0.001
maSigPro	7.307	0.088	7.433
maSigProUsersGuide	0.007	0.005	0.012
make.design.matrix	0.020	0.019	0.039
p.vector	3.335	0.053	3.391
position	0.001	0.000	0.001
reg.coeffs	0.001	0.000	0.001
see.genes	1.368	0.302	1.971
seeDS	21.955	0.889	22.933
stepback	0.035	0.001	0.037
stepfor	0.181	0.002	0.184
suma2Venn	0.110	0.008	0.134
tableDS	22.180	0.844	23.112
two.ways.stepback	0.112	0.002	0.113
two.ways.stepfor	0.161	0.003	0.164

CHECK report for maSigPro on celaya2

Summary

Command output

Installation output

Tests output

Example timings