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INSTALL report for karyoploteR on tokay2

This page was generated on 2019-10-16 12:37:39 -0400 (Wed, 16 Oct 2019).

Package 851/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
karyoploteR 1.10.5
Bernat Gel
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/karyoploteR
Branch: RELEASE_3_9
Last Commit: 3d1c8a2
Last Changed Date: 2019-09-10 03:24:18 -0400 (Tue, 10 Sep 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: karyoploteR
Version: 1.10.5
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/karyoploteR_1.10.5.tar.gz && rm -rf karyoploteR.buildbin-libdir && mkdir karyoploteR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=karyoploteR.buildbin-libdir karyoploteR_1.10.5.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL karyoploteR_1.10.5.zip && rm karyoploteR_1.10.5.tar.gz karyoploteR_1.10.5.zip
StartedAt: 2019-10-15 20:47:12 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:48:38 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 85.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/karyoploteR_1.10.5.tar.gz && rm -rf karyoploteR.buildbin-libdir && mkdir karyoploteR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=karyoploteR.buildbin-libdir karyoploteR_1.10.5.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL karyoploteR_1.10.5.zip && rm karyoploteR_1.10.5.tar.gz karyoploteR_1.10.5.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  295k  100  295k    0     0  4548k      0 --:--:-- --:--:-- --:--:-- 5095k

install for i386

* installing *source* package 'karyoploteR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'karyoploteR'
    finding HTML links ... done
    addGeneNames                            html  
    autotrack                               html  
    colByChr                                html  
    colByRegion                             html  
    darker                                  html  
    filterParams                            html  
    getChromosomeNamesBoundingBox           html  
    getCytobandColors                       html  
    getCytobands                            html  
    finding level-2 HTML links ... done

    getDataPanelBoundingBox                 html  
    getDefaultPlotParams                    html  
    getMainTitleBoundingBox                 html  
    getTextSize                             html  
    getVariantsColors                       html  
    is.color                                html  
    kpAbline                                html  
    kpAddBaseNumbers                        html  
    kpAddChromosomeNames                    html  
    kpAddChromosomeSeparators               html  
    kpAddCytobandLabels                     html  
    kpAddCytobands                          html  
    kpAddCytobandsAsLine                    html  
    kpAddLabels                             html  
    kpAddMainTitle                          html  
    kpArea                                  html  
    kpArrows                                html  
    kpAxis                                  html  
    kpBars                                  html  
    kpDataBackground                        html  
    kpHeatmap                               html  
    kpLines                                 html  
    kpPlotBAMCoverage                       html  
    kpPlotBAMDensity                        html  
    kpPlotBigWig                            html  
    kpPlotCoverage                          html  
    kpPlotDensity                           html  
    kpPlotGenes                             html  
    kpPlotLinks                             html  
    kpPlotLoess                             html  
    kpPlotMarkers                           html  
    kpPlotNames                             html  
    kpPlotRainfall                          html  
    kpPlotRegions                           html  
    kpPlotRibbon                            html  
    kpPlotTranscripts                       html  
    kpPoints                                html  
    kpPolygon                               html  
    kpRect                                  html  
    kpSegments                              html  
    kpText                                  html  
    lighter                                 html  
    makeGenesDataFromTxDb                   html  
    mergeTranscripts                        html  
    plotDefaultPlotParams                   html  
    plotKaryotype                           html  
    prepareParameters2                      html  
    prepareParameters4                      html  
    processClipping                         html  
    transparent                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'karyoploteR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'karyoploteR' as karyoploteR_1.10.5.zip
* DONE (karyoploteR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'karyoploteR' successfully unpacked and MD5 sums checked