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INSTALL report for iBBiG on tokay2

This page was generated on 2019-10-16 12:26:24 -0400 (Wed, 16 Oct 2019).

Package 782/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iBBiG 1.28.0
Aedin Culhane
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/iBBiG
Branch: RELEASE_3_9
Last Commit: 69ee95b
Last Changed Date: 2019-05-02 11:53:35 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: iBBiG
Version: 1.28.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/iBBiG_1.28.0.tar.gz && rm -rf iBBiG.buildbin-libdir && mkdir iBBiG.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iBBiG.buildbin-libdir iBBiG_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL iBBiG_1.28.0.zip && rm iBBiG_1.28.0.tar.gz iBBiG_1.28.0.zip
StartedAt: 2019-10-15 19:08:20 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:09:26 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 66.2 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/iBBiG_1.28.0.tar.gz && rm -rf iBBiG.buildbin-libdir && mkdir iBBiG.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iBBiG.buildbin-libdir iBBiG_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL iBBiG_1.28.0.zip && rm iBBiG_1.28.0.tar.gz iBBiG_1.28.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 18838  100 18838    0     0   164k      0 --:--:-- --:--:-- --:--:--  175k

install for i386

* installing *source* package 'iBBiG' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c R_init_iBBiG.c -o R_init_iBBiG.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c iBBiG.c -o iBBiG.o
iBBiG.c: In function 'clusterCovsC':
iBBiG.c:300:6: warning: implicit declaration of function 'time' [-Wimplicit-function-declaration]
      srand((unsigned)time(NULL));     
      ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o iBBiG.dll tmp.def R_init_iBBiG.o iBBiG.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/iBBiG.buildbin-libdir/00LOCK-iBBiG/00new/iBBiG/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'iBBiG'
    finding HTML links ... done
    iBBiG-class                             html  
    finding level-2 HTML links ... done

    iBBiG-package                           html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpU1FIir/R.INSTALLf105243ff5/iBBiG/man/iBBiG-package.Rd:44: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
    iBBiG                                   html  
    makeArtificial                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'iBBiG' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c R_init_iBBiG.c -o R_init_iBBiG.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c iBBiG.c -o iBBiG.o
iBBiG.c: In function 'clusterCovsC':
iBBiG.c:300:6: warning: implicit declaration of function 'time' [-Wimplicit-function-declaration]
      srand((unsigned)time(NULL));     
      ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o iBBiG.dll tmp.def R_init_iBBiG.o iBBiG.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/iBBiG.buildbin-libdir/iBBiG/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iBBiG' as iBBiG_1.28.0.zip
* DONE (iBBiG)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'iBBiG' successfully unpacked and MD5 sums checked