Andreas Mitterecker
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/hapFabia |
| Branch: RELEASE_3_9 |
| Last Commit: 052e3e1 |
| Last Changed Date: 2019-05-02 11:53:38 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:26:54 -0400 (Wed, 16 Oct 2019).
| Package 740/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| hapFabia 1.26.0 Andreas Mitterecker
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: hapFabia |
| Version: 1.26.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/hapFabia_1.26.0.tar.gz && rm -rf hapFabia.buildbin-libdir && mkdir hapFabia.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hapFabia.buildbin-libdir hapFabia_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL hapFabia_1.26.0.zip && rm hapFabia_1.26.0.tar.gz hapFabia_1.26.0.zip |
| StartedAt: 2019-10-15 18:52:01 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 18:53:00 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 58.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/hapFabia_1.26.0.tar.gz && rm -rf hapFabia.buildbin-libdir && mkdir hapFabia.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hapFabia.buildbin-libdir hapFabia_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL hapFabia_1.26.0.zip && rm hapFabia_1.26.0.tar.gz hapFabia_1.26.0.zip
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install for i386
* installing *source* package 'hapFabia' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c interfaceR.c -o interfaceR.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c split_sparse_matrixB.c -o split_sparse_matrixB.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c vcftoFABIAB.c -o vcftoFABIAB.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o hapFabia.dll tmp.def interfaceR.o split_sparse_matrixB.o vcftoFABIAB.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/hapFabia.buildbin-libdir/00LOCK-hapFabia/00new/hapFabia/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'hapFabia'
finding HTML links ... done
IBDsegment-class html
IBDsegmentList-class html
IBDsegmentList2excel html
analyzeIBDsegments html
chr1ASW1000G html
compareIBDsegmentLists html
extractIBDsegments html
findDenseRegions html
hapFabia html
hapFabiaVersion html
hapRes html
identifyDuplicates html
iterateIntervals html
makePipelineFile html
matrixPlot html
mergeIBDsegmentLists html
mergedIBDsegmentList html
plotIBDsegment html
res html
setAnnotation html
setStatistics html
sim html
simu html
simulateIBDsegments html
simulateIBDsegmentsFabia html
split_sparse_matrix html
toolsFactorizationClass html
vcftoFABIA html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'hapFabia' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c interfaceR.c -o interfaceR.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c split_sparse_matrixB.c -o split_sparse_matrixB.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c vcftoFABIAB.c -o vcftoFABIAB.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o hapFabia.dll tmp.def interfaceR.o split_sparse_matrixB.o vcftoFABIAB.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/hapFabia.buildbin-libdir/hapFabia/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hapFabia' as hapFabia_1.26.0.zip
* DONE (hapFabia)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'hapFabia' successfully unpacked and MD5 sums checked