Package: genomeIntervals

Version: 1.40.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/genomeIntervals_1.40.0.tar.gz && rm -rf genomeIntervals.buildbin-libdir && mkdir genomeIntervals.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genomeIntervals.buildbin-libdir genomeIntervals_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL genomeIntervals_1.40.0.zip && rm genomeIntervals_1.40.0.tar.gz genomeIntervals_1.40.0.zip

StartedAt: 2019-10-15 19:59:46 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 20:00:23 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 37.3 seconds

RetCode: 0

Status:  OK

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/genomeIntervals_1.40.0.tar.gz && rm -rf genomeIntervals.buildbin-libdir && mkdir genomeIntervals.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genomeIntervals.buildbin-libdir genomeIntervals_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL genomeIntervals_1.40.0.zip && rm genomeIntervals_1.40.0.tar.gz genomeIntervals_1.40.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 38716  100 38716    0     0   676k      0 --:--:-- --:--:-- --:--:--  787k

install for i386

* installing *source* package 'genomeIntervals' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'genomeIntervals'
    finding HTML links ... done
    GenomeIntervals-constructor             html  
    Genome_intervals-class                  html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwvqB4i/R.INSTALL1894722f3990/genomeIntervals/man/Genome_intervals-class.Rd:110: file link 'width' in package 'IRanges' does not exist and so has been treated as a topic
    Genome_intervals-coercion-methods       html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwvqB4i/R.INSTALL1894722f3990/genomeIntervals/man/Genome_intervals-coercion-methods.Rd:49: file link 'readGff3' in package 'genomeIntervals' does not exist and so has been treated as a topic
    Genome_intervals-deprecated             html  
    Genome_intervals-ordering               html  
    Genome_intervals_stranded-class         html  
    c.Genome_intervals                      html  
    core_annotated                          html  
    distance_to_nearest-methods             html  
    gen_ints                                html  
    genomeIntervals-package                 html  
    genomeIntervals-readGff3                html  
    getGffAttribute                         html  
    interval_overlap-methods                html  
    interval_set_operations-methods         html  
    parseGffAttributes                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'genomeIntervals' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genomeIntervals' as genomeIntervals_1.40.0.zip
* DONE (genomeIntervals)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'genomeIntervals' successfully unpacked and MD5 sums checked