gdsfmt 1.20.0
Xiuwen Zheng
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/gdsfmt |
| Branch: RELEASE_3_9 |
| Last Commit: b1fbaba |
| Last Changed Date: 2019-05-02 11:53:52 -0400 (Thu, 02 May 2019) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | [ OK ] | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL gdsfmt
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘gdsfmt’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c R_CoreArray.cpp -o R_CoreArray.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c gdsfmt.cpp -o gdsfmt.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c digest.cpp -o digest.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dAny.cpp -o CoreArray/dAny.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dBase.cpp -o CoreArray/dBase.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dFile.cpp -o CoreArray/dFile.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dRealGDS.cpp -o CoreArray/dRealGDS.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dStrGDS.cpp -o CoreArray/dStrGDS.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dStream.cpp -o CoreArray/dStream.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dVLIntGDS.cpp -o CoreArray/dVLIntGDS.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c ZLIB/adler32.c -o ZLIB/adler32.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c ZLIB/compress.c -o ZLIB/compress.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c ZLIB/crc32.c -o ZLIB/crc32.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c ZLIB/deflate.c -o ZLIB/deflate.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c ZLIB/infback.c -o ZLIB/infback.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c ZLIB/inffast.c -o ZLIB/inffast.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c ZLIB/inflate.c -o ZLIB/inflate.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c ZLIB/inftrees.c -o ZLIB/inftrees.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c ZLIB/trees.c -o ZLIB/trees.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c ZLIB/uncompr.c -o ZLIB/uncompr.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c ZLIB/zutil.c -o ZLIB/zutil.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c LZ4/lz4.c -o LZ4/lz4.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c LZ4/lz4hc.c -o LZ4/lz4hc.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c LZ4/lz4frame.c -o LZ4/lz4frame.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c LZ4/xxhash.c -o LZ4/xxhash.o
cd XZ && tar -xzf xz-5.2.3.tar.gz
cd XZ/xz-5.2.3 && \
./configure CC="gcc" CPP="gcc -E" CXX="g++ -std=gnu++11" CXXCPP="g++ -std=gnu++11 -E" --build="" \
--with-pic --enable-silent-rules --quiet --disable-xz > /dev/null
cd XZ/xz-5.2.3/src/liblzma && make
make[1]: Entering directory '/home/biocbuild/bbs-3.9-bioc/meat/gdsfmt/src/XZ/xz-5.2.3/src/liblzma'
Making all in api
make[2]: Entering directory '/home/biocbuild/bbs-3.9-bioc/meat/gdsfmt/src/XZ/xz-5.2.3/src/liblzma/api'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/biocbuild/bbs-3.9-bioc/meat/gdsfmt/src/XZ/xz-5.2.3/src/liblzma/api'
make[2]: Entering directory '/home/biocbuild/bbs-3.9-bioc/meat/gdsfmt/src/XZ/xz-5.2.3/src/liblzma'
CC liblzma_la-tuklib_physmem.lo
CC liblzma_la-tuklib_cpucores.lo
CC liblzma_la-common.lo
CC liblzma_la-block_util.lo
CC liblzma_la-easy_preset.lo
CC liblzma_la-filter_common.lo
CC liblzma_la-hardware_physmem.lo
CC liblzma_la-index.lo
CC liblzma_la-stream_flags_common.lo
CC liblzma_la-vli_size.lo
CC liblzma_la-hardware_cputhreads.lo
CC liblzma_la-alone_encoder.lo
CC liblzma_la-block_buffer_encoder.lo
CC liblzma_la-block_encoder.lo
CC liblzma_la-block_header_encoder.lo
CC liblzma_la-easy_buffer_encoder.lo
CC liblzma_la-easy_encoder.lo
CC liblzma_la-easy_encoder_memusage.lo
CC liblzma_la-filter_buffer_encoder.lo
CC liblzma_la-filter_encoder.lo
CC liblzma_la-filter_flags_encoder.lo
CC liblzma_la-index_encoder.lo
CC liblzma_la-stream_buffer_encoder.lo
CC liblzma_la-stream_encoder.lo
CC liblzma_la-stream_flags_encoder.lo
CC liblzma_la-vli_encoder.lo
CC liblzma_la-outqueue.lo
CC liblzma_la-stream_encoder_mt.lo
CC liblzma_la-alone_decoder.lo
CC liblzma_la-auto_decoder.lo
CC liblzma_la-block_buffer_decoder.lo
CC liblzma_la-block_decoder.lo
CC liblzma_la-block_header_decoder.lo
CC liblzma_la-easy_decoder_memusage.lo
CC liblzma_la-filter_buffer_decoder.lo
CC liblzma_la-filter_decoder.lo
CC liblzma_la-filter_flags_decoder.lo
CC liblzma_la-index_decoder.lo
CC liblzma_la-index_hash.lo
CC liblzma_la-stream_buffer_decoder.lo
CC liblzma_la-stream_decoder.lo
CC liblzma_la-stream_flags_decoder.lo
CC liblzma_la-vli_decoder.lo
CC liblzma_la-check.lo
CC liblzma_la-crc32_table.lo
CC liblzma_la-crc32_fast.lo
CC liblzma_la-crc64_table.lo
CC liblzma_la-crc64_fast.lo
CC liblzma_la-sha256.lo
CC liblzma_la-lz_encoder.lo
CC liblzma_la-lz_encoder_mf.lo
CC liblzma_la-lz_decoder.lo
CC liblzma_la-lzma_encoder_presets.lo
CC liblzma_la-lzma_encoder.lo
CC liblzma_la-lzma_encoder_optimum_fast.lo
CC liblzma_la-lzma_encoder_optimum_normal.lo
CC liblzma_la-fastpos_table.lo
CC liblzma_la-lzma_decoder.lo
lzma/lzma_decoder.c: In function ‘lzma_decode’:
lzma/lzma_decoder.c:577:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
--limit;
^~~~~~~
lzma/lzma_decoder.c:578:6: note: here
case 4:
^~~~
lzma/lzma_decoder.c:583:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
--limit;
^~~~~~~
lzma/lzma_decoder.c:584:6: note: here
case 3:
^~~~
lzma/lzma_decoder.c:589:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
--limit;
^~~~~~~
lzma/lzma_decoder.c:590:6: note: here
case 2:
^~~~
lzma/lzma_decoder.c:595:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
--limit;
^~~~~~~
lzma/lzma_decoder.c:596:6: note: here
case 1:
^~~~
lzma/lzma_decoder.c:354:13: warning: this statement may fall through [-Wimplicit-fallthrough=]
pos_state = dict.pos & pos_mask;
~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lzma/lzma_decoder.c:356:2: note: here
case SEQ_NORMALIZE:
^~~~
In file included from lzma/lzma_decoder.c:17:0:
../../src/liblzma/rangecoder/range_decoder.h:132:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
prob -= (prob) >> RC_MOVE_BITS; \
lzma/lzma_decoder.c:491:3: note: in expansion of macro ‘rc_update_1’
rc_update_1(coder->is_match[state][pos_state]);
^~~~~~~~~~~
lzma/lzma_decoder.c:493:2: note: here
case SEQ_IS_REP:
^~~~
lzma/lzma_decoder.c:692:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (unlikely(!dict_is_distance_valid(&dict, 0))) {
^
lzma/lzma_decoder.c:697:2: note: here
case SEQ_IS_REP0:
^~~~
In file included from lzma/lzma_decoder.c:17:0:
../../src/liblzma/rangecoder/range_decoder.h:132:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
prob -= (prob) >> RC_MOVE_BITS; \
lzma/lzma_decoder.c:726:5: note: in expansion of macro ‘rc_update_1’
rc_update_1(coder->is_rep0[state]);
^~~~~~~~~~~
lzma/lzma_decoder.c:728:2: note: here
case SEQ_IS_REP1:
^~~~
In file included from lzma/lzma_decoder.c:17:0:
../../src/liblzma/rangecoder/range_decoder.h:132:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
prob -= (prob) >> RC_MOVE_BITS; \
lzma/lzma_decoder.c:741:6: note: in expansion of macro ‘rc_update_1’
rc_update_1(coder->is_rep1[state]);
^~~~~~~~~~~
lzma/lzma_decoder.c:742:2: note: here
case SEQ_IS_REP2:
^~~~
lzma/lzma_decoder.c:113:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
symbol = 1; \
~~~~~~~^~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
lzma/lzma_decoder.c:114:1: note: here
case seq ## _CHOICE: \
^
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
In file included from lzma/lzma_decoder.c:17:0:
../../src/liblzma/rangecoder/range_decoder.h:132:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
prob -= (prob) >> RC_MOVE_BITS; \
lzma/lzma_decoder.c:122:3: note: in expansion of macro ‘rc_update_1’
rc_update_1(ld.choice); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
lzma/lzma_decoder.c:123:1: note: here
case seq ## _CHOICE2: \
^
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
In file included from lzma/lzma_decoder.c:17:0:
../../src/liblzma/rangecoder/range_decoder.h:132:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
prob -= (prob) >> RC_MOVE_BITS; \
lzma/lzma_decoder.c:135:4: note: in expansion of macro ‘rc_update_1’
rc_update_1(ld.choice2); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:2: note: here
case seq: rc_bit(prob, action0, action1, seq)
^
lzma/lzma_decoder.c:136:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH0); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:114:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (rc.code < rc_bound)
^
../../src/liblzma/rangecoder/range_decoder.h:142:2: note: in expansion of macro ‘rc_if_0’
rc_if_0(prob, seq) { \
^~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:155:2: note: in expansion of macro ‘rc_bit_last’
rc_bit_last(prob, \
^~~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:12: note: in expansion of macro ‘rc_bit’
case seq: rc_bit(prob, action0, action1, seq)
^~~~~~
lzma/lzma_decoder.c:136:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH0); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:2: note: here
case seq: rc_bit(prob, action0, action1, seq)
^
lzma/lzma_decoder.c:137:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH1); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:114:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (rc.code < rc_bound)
^
../../src/liblzma/rangecoder/range_decoder.h:142:2: note: in expansion of macro ‘rc_if_0’
rc_if_0(prob, seq) { \
^~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:155:2: note: in expansion of macro ‘rc_bit_last’
rc_bit_last(prob, \
^~~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:12: note: in expansion of macro ‘rc_bit’
case seq: rc_bit(prob, action0, action1, seq)
^~~~~~
lzma/lzma_decoder.c:137:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH1); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:2: note: here
case seq: rc_bit(prob, action0, action1, seq)
^
lzma/lzma_decoder.c:138:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH2); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:114:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (rc.code < rc_bound)
^
../../src/liblzma/rangecoder/range_decoder.h:142:2: note: in expansion of macro ‘rc_if_0’
rc_if_0(prob, seq) { \
^~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:155:2: note: in expansion of macro ‘rc_bit_last’
rc_bit_last(prob, \
^~~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:12: note: in expansion of macro ‘rc_bit’
case seq: rc_bit(prob, action0, action1, seq)
^~~~~~
lzma/lzma_decoder.c:138:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH2); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:2: note: here
case seq: rc_bit(prob, action0, action1, seq)
^
lzma/lzma_decoder.c:139:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH3); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:114:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (rc.code < rc_bound)
^
../../src/liblzma/rangecoder/range_decoder.h:142:2: note: in expansion of macro ‘rc_if_0’
rc_if_0(prob, seq) { \
^~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:155:2: note: in expansion of macro ‘rc_bit_last’
rc_bit_last(prob, \
^~~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:12: note: in expansion of macro ‘rc_bit’
case seq: rc_bit(prob, action0, action1, seq)
^~~~~~
lzma/lzma_decoder.c:139:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH3); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:2: note: here
case seq: rc_bit(prob, action0, action1, seq)
^
lzma/lzma_decoder.c:140:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH4); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:114:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (rc.code < rc_bound)
^
../../src/liblzma/rangecoder/range_decoder.h:142:2: note: in expansion of macro ‘rc_if_0’
rc_if_0(prob, seq) { \
^~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:155:2: note: in expansion of macro ‘rc_bit_last’
rc_bit_last(prob, \
^~~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:12: note: in expansion of macro ‘rc_bit’
case seq: rc_bit(prob, action0, action1, seq)
^~~~~~
lzma/lzma_decoder.c:140:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH4); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:2: note: here
case seq: rc_bit(prob, action0, action1, seq)
^
lzma/lzma_decoder.c:141:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH5); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:114:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (rc.code < rc_bound)
^
../../src/liblzma/rangecoder/range_decoder.h:142:2: note: in expansion of macro ‘rc_if_0’
rc_if_0(prob, seq) { \
^~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:155:2: note: in expansion of macro ‘rc_bit_last’
rc_bit_last(prob, \
^~~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:12: note: in expansion of macro ‘rc_bit’
case seq: rc_bit(prob, action0, action1, seq)
^~~~~~
lzma/lzma_decoder.c:141:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH5); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:2: note: here
case seq: rc_bit(prob, action0, action1, seq)
^
lzma/lzma_decoder.c:142:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH6); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:114:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (rc.code < rc_bound)
^
../../src/liblzma/rangecoder/range_decoder.h:142:2: note: in expansion of macro ‘rc_if_0’
rc_if_0(prob, seq) { \
^~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:155:2: note: in expansion of macro ‘rc_bit_last’
rc_bit_last(prob, \
^~~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:12: note: in expansion of macro ‘rc_bit’
case seq: rc_bit(prob, action0, action1, seq)
^~~~~~
lzma/lzma_decoder.c:142:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH6); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
../../src/liblzma/rangecoder/range_decoder.h:167:2: note: here
case seq: rc_bit(prob, action0, action1, seq)
^
lzma/lzma_decoder.c:143:4: note: in expansion of macro ‘rc_bit_case’
rc_bit_case(ld.high[symbol], , , seq ## _HIGH7); \
^~~~~~~~~~~
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
lzma/lzma_decoder.c:144:11: warning: this statement may fall through [-Wimplicit-fallthrough=]
target = symbol - LEN_HIGH_SYMBOLS \
lzma/lzma_decoder.c:769:4: note: in expansion of macro ‘len_decode’
len_decode(len, coder->rep_len_decoder,
^~~~~~~~~~
lzma/lzma_decoder.c:782:2: note: here
case SEQ_COPY:
^~~~
CC liblzma_la-lzma2_encoder.lo
CC liblzma_la-lzma2_decoder.lo
CC liblzma_la-price_table.lo
CC liblzma_la-delta_common.lo
CC liblzma_la-delta_encoder.lo
CC liblzma_la-delta_decoder.lo
CC liblzma_la-simple_coder.lo
CC liblzma_la-simple_encoder.lo
CC liblzma_la-simple_decoder.lo
CC liblzma_la-x86.lo
CC liblzma_la-powerpc.lo
CC liblzma_la-ia64.lo
CC liblzma_la-arm.lo
CC liblzma_la-armthumb.lo
CC liblzma_la-sparc.lo
CCLD liblzma.la
ar: `u' modifier ignored since `D' is the default (see `U')
PC liblzma.pc
make[2]: Leaving directory '/home/biocbuild/bbs-3.9-bioc/meat/gdsfmt/src/XZ/xz-5.2.3/src/liblzma'
make[1]: Leaving directory '/home/biocbuild/bbs-3.9-bioc/meat/gdsfmt/src/XZ/xz-5.2.3/src/liblzma'
cp XZ/xz-5.2.3/src/liblzma/.libs/liblzma.a .
rm -rf XZ/xz-5.2.3/dos
rm -rf XZ/xz-5.2.3/po
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o gdsfmt.so R_CoreArray.o gdsfmt.o digest.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dRealGDS.o CoreArray/dSerial.o CoreArray/dStrGDS.o CoreArray/dStream.o CoreArray/dStruct.o CoreArray/dVLIntGDS.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o ./liblzma.a -lpthread -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-gdsfmt/00new/gdsfmt/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gdsfmt)