Back to Multiple platform build/check report for BioC 3.9
ABCDE[F]GHIJKLMNOPQRSTUVWXYZ

INSTALL report for flipflop on celaya2

This page was generated on 2019-10-16 12:52:18 -0400 (Wed, 16 Oct 2019).

Package 554/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flipflop 1.22.0
Elsa Bernard
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/flipflop
Branch: RELEASE_3_9
Last Commit: e01b4e1
Last Changed Date: 2019-05-02 11:53:46 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  ERROR  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64 [ ERROR ] ERROR  skipped  skipped 

Summary

Package: flipflop
Version: 1.22.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL flipflop
StartedAt: 2019-10-15 18:50:26 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 18:50:49 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 22.8 seconds
RetCode: 1
Status:  ERROR 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL flipflop
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘flipflop’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I. -Ispams/linalg -Ispams/prox -Ispams/decomp -Ispams/dags -fopenmp   -DUSE_BLAS_LIB -DNDEBUG -fPIC  -Wall -g -O2  -c FileSplitter.cpp -o FileSplitter.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c R_init_flipflop.c -o R_init_flipflop.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I. -Ispams/linalg -Ispams/prox -Ispams/decomp -Ispams/dags -fopenmp   -DUSE_BLAS_LIB -DNDEBUG -fPIC  -Wall -g -O2  -c align.cpp -o align.o
In file included from align.cpp:5:
In file included from ./align.h:5:
./commontype.h:18:51: error: no matching function for call to 'make_pair'
inline range_t make_range_t(long a,long b){return make_pair(a,b);}
                                                  ^~~~~~~~~~~~~~~~~~~~
/usr/local/clang4/bin/../include/c++/v1/utility:632:1: note: candidate function not viable: no known conversion from 'long' to 'long &&' for 1st argument
make_pair(_T1&& __t1, _T2&& __t2)
^
1 error generated.
make: *** [align.o] Error 1
ERROR: compilation failed for package ‘flipflop’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/flipflop’