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BUILD BIN report for fastseg on tokay2

This page was generated on 2019-10-16 12:25:59 -0400 (Wed, 16 Oct 2019).

Package 539/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fastseg 1.30.0
Guenter Klambauer
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/fastseg
Branch: RELEASE_3_9
Last Commit: 54f18c5
Last Changed Date: 2019-05-02 11:53:33 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: fastseg
Version: 1.30.0
Command: rm -rf fastseg.buildbin-libdir && mkdir fastseg.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fastseg.buildbin-libdir fastseg_1.30.0.tar.gz
StartedAt: 2019-10-16 09:11:19 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 09:11:56 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 37.0 seconds
RetCode: 0
Status:  OK  
PackageFile: fastseg_1.30.0.zip
PackageFileSize: 955.1 KiB

Command output

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###
### Running command:
###
###   rm -rf fastseg.buildbin-libdir && mkdir fastseg.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fastseg.buildbin-libdir fastseg_1.30.0.tar.gz
###
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##############################################################################



install for i386

* installing *source* package 'fastseg' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c R_init_fastseg.c -o R_init_fastseg.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c segment.cpp -o segment.o
segment.cpp: In function 'SEXPREC* segment(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
segment.cpp:60:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
  double globalMean,globalSd,diff,M2,globalVariance;
                    ^
segment.cpp:61:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
  double oldStatistic, meanLeft,meanRight,varLeft,varRight;
         ^
segment.cpp:62:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
  double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                               ^
segment.cpp:63:40: warning: variable 'maxIdx' set but not used [-Wunused-but-set-variable]
  double newPValue, maxPValue,oldPValue,maxIdx;
                                        ^
In file included from segment.cpp:10:0:
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include/Rmath.h:212:15: warning: unused variable 'Rf_beta' [-Wunused-variable]
 #define beta  Rf_beta
               ^
segment.cpp:65:9: note: in expansion of macro 'beta'
  double beta,nn;
         ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c segmentCyberT.cpp -o segmentCyberT.o
segmentCyberT.cpp: In function 'SEXPREC* segmentCyberT(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
segmentCyberT.cpp:59:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
  double globalMean,globalSd,diff,M2,globalVariance;
                    ^
segmentCyberT.cpp:60:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
  double oldStatistic,meanLeft,meanRight,varLeft,varRight;
         ^
segmentCyberT.cpp:61:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
  double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                               ^
In file included from segmentCyberT.cpp:10:0:
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include/Rmath.h:212:15: warning: unused variable 'Rf_beta' [-Wunused-variable]
 #define beta  Rf_beta
               ^
segmentCyberT.cpp:63:50: note: in expansion of macro 'beta'
  double newStatisticBptLeft,newStatisticBptRight,beta,nn;
                                                  ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o fastseg.dll tmp.def R_init_fastseg.o segment.o segmentCyberT.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/fastseg.buildbin-libdir/00LOCK-fastseg/00new/fastseg/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fastseg'
    finding HTML links ... done
    coriell                                 html  
    fastseg                                 html  
    fastsegData                             html  
    segPlot                                 html  
    toDNAcopyObj                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'fastseg' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c R_init_fastseg.c -o R_init_fastseg.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c segment.cpp -o segment.o
segment.cpp: In function 'SEXPREC* segment(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
segment.cpp:60:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
  double globalMean,globalSd,diff,M2,globalVariance;
                    ^
segment.cpp:61:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
  double oldStatistic, meanLeft,meanRight,varLeft,varRight;
         ^
segment.cpp:62:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
  double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                               ^
segment.cpp:63:40: warning: variable 'maxIdx' set but not used [-Wunused-but-set-variable]
  double newPValue, maxPValue,oldPValue,maxIdx;
                                        ^
In file included from segment.cpp:10:0:
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include/Rmath.h:212:15: warning: unused variable 'Rf_beta' [-Wunused-variable]
 #define beta  Rf_beta
               ^
segment.cpp:65:9: note: in expansion of macro 'beta'
  double beta,nn;
         ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c segmentCyberT.cpp -o segmentCyberT.o
segmentCyberT.cpp: In function 'SEXPREC* segmentCyberT(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
segmentCyberT.cpp:59:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
  double globalMean,globalSd,diff,M2,globalVariance;
                    ^
segmentCyberT.cpp:60:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
  double oldStatistic,meanLeft,meanRight,varLeft,varRight;
         ^
segmentCyberT.cpp:61:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
  double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                               ^
In file included from segmentCyberT.cpp:10:0:
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include/Rmath.h:212:15: warning: unused variable 'Rf_beta' [-Wunused-variable]
 #define beta  Rf_beta
               ^
segmentCyberT.cpp:63:50: note: in expansion of macro 'beta'
  double newStatisticBptLeft,newStatisticBptRight,beta,nn;
                                                  ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o fastseg.dll tmp.def R_init_fastseg.o segment.o segmentCyberT.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/fastseg.buildbin-libdir/fastseg/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fastseg' as fastseg_1.30.0.zip
* DONE (fastseg)