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INSTALL report for epivizrChart on tokay2

This page was generated on 2019-10-16 12:38:56 -0400 (Wed, 16 Oct 2019).

Package 512/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
epivizrChart 1.6.0
Hector Corrada Bravo
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/epivizrChart
Branch: RELEASE_3_9
Last Commit: cb21783
Last Changed Date: 2019-05-02 11:54:07 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: epivizrChart
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/epivizrChart_1.6.0.tar.gz && rm -rf epivizrChart.buildbin-libdir && mkdir epivizrChart.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizrChart.buildbin-libdir epivizrChart_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL epivizrChart_1.6.0.zip && rm epivizrChart_1.6.0.tar.gz epivizrChart_1.6.0.zip
StartedAt: 2019-10-15 20:49:41 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:52:12 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 151.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/epivizrChart_1.6.0.tar.gz && rm -rf epivizrChart.buildbin-libdir && mkdir epivizrChart.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizrChart.buildbin-libdir epivizrChart_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL epivizrChart_1.6.0.zip && rm epivizrChart_1.6.0.tar.gz epivizrChart_1.6.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2542k  100 2542k    0     0  25.4M      0 --:--:-- --:--:-- --:--:-- 27.5M

install for i386

* installing *source* package 'epivizrChart' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'epivizrChart'
    finding HTML links ... done
    BlocksTrack-methods                     html  
    EpivizBlocksTrack-class                 html  
    EpivizChart-class                       html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/EpivizChart-class.Rd:20: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
    EpivizChartDataMgr-class                html  
    EpivizDataSource-class                  html  
    EpivizEnvironment-class                 html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/EpivizEnvironment-class.Rd:14: file link 'EpivizViewComponent' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/EpivizEnvironment-class.Rd:18: file link 'EpivizDataSource' in package 'epivizrChart' does not exist and so has been treated as a topic
    EpivizGenesTrack-class                  html  
    EpivizHeatmapPlot-class                 html  
    EpivizIGVTrack-class                    html  
    EpivizLinePlot-class                    html  
    EpivizLineTrack-class                   html  
    EpivizNavigation-class                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/EpivizNavigation-class.Rd:18: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
    EpivizScatterPlot-class                 html  
    EpivizStackedBlocksTrack-class          html  
    EpivizStackedLinePlot-class             html  
    EpivizStackedLineTrack-class            html  
    EpivizViewComponent-class               html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/EpivizViewComponent-class.Rd:20: file link 'EpivizMeasurement' in package 'epivizrData' does not exist and so has been treated as a topic
    EpivizWebComponent-class                html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/EpivizWebComponent-class.Rd:14: file link 'EpivizChartDataMgr' in package 'epivizrChart' does not exist and so has been treated as a topic
    HeatmapPlot-methods                     html  
    LinePlot-methods                        html  
    LineTrack-methods                       html  
    ScatterPlot-methods                     html  
    StackedBlocksTrack-methods              html  
    StackedLinePlot-methods                 html  
    StackedLineTrack-methods                html  
    append_region-methods                   html  
    bcode_eset                              html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/bcode_eset.Rd:7: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/bcode_eset.Rd:12: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    cgi_gr                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/cgi_gr.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/cgi_gr.Rd:12: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    chart_default_settings_colors           html  
    dot-constructURL                        html  
    dot-initialize_chart                    html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/dot-initialize_chart.Rd:12: file link 'EpivizChart' in package 'epivizrChart' does not exist and so has been treated as a topic
    dot-register_all_the_epiviz_things      html  
    dot-settings_as_df                      html  
    epivizChart                             html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizChart.Rd:12: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizChart.Rd:14: file link 'EpivizMeasurement' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizChart.Rd:18: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizChart.Rd:18: file link 'EpivizNavigation' in package 'epivizrChart' does not exist and so has been treated as a topic
    epivizEnv                               html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizEnv.Rd:5: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizEnv.Rd:25: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizEnv.Rd:19: file link 'EpivizWebComponent' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizEnv.Rd:22: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
    epivizNav                               html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizNav.Rd:5: file link 'EpivizNavigation' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizNav.Rd:27: file link 'EpivizNavigation' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizNav.Rd:17: file link 'EpivizEnvironment' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizNav.Rd:17: file link 'EpivizNavigation' in package 'epivizrChart' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/epivizNav.Rd:24: file link 'EpivizNavigation' in package 'epivizrChart' does not exist and so has been treated as a topic
    get_available_chart_types               html  
    get_registered_data_types               html  
    json_parser                             html  
    finding level-2 HTML links ... done

    json_writer                             html  
    plot-EpivizEnvironment-ANY-method       html  
    rand_id                                 html  
    sumexp                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/sumexp.Rd:12: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
    tcga_colon_blocks                       html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_blocks.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_blocks.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    tcga_colon_curves                       html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_curves.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_curves.Rd:25: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    tcga_colon_expression                   html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_expression.Rd:23: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_expression.Rd:7: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmporpd3K/R.INSTALL20c02fd505a/epivizrChart/man/tcga_colon_expression.Rd:20: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'epivizrChart' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'epivizrChart' as epivizrChart_1.6.0.zip
* DONE (epivizrChart)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'epivizrChart' successfully unpacked and MD5 sums checked