Kieran O'Neill
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/contiBAIT |
| Branch: RELEASE_3_9 |
| Last Commit: 406d05f |
| Last Changed Date: 2019-05-02 11:54:00 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:57:13 -0400 (Wed, 16 Oct 2019).
| Package 339/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| contiBAIT 1.12.0 Kieran O'Neill
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: contiBAIT |
| Version: 1.12.0 |
| Command: rm -rf contiBAIT.buildbin-libdir && mkdir contiBAIT.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh contiBAIT_1.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R contiBAIT.buildbin-libdir |
| StartedAt: 2019-10-16 08:23:43 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 08:25:14 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 91.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: contiBAIT_1.12.0.tgz |
| PackageFileSize: 4.321 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf contiBAIT.buildbin-libdir && mkdir contiBAIT.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh contiBAIT_1.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R contiBAIT.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=contiBAIT.buildbin-libdir contiBAIT_1.12.0.tar.gz' >>>>>>> * installing *source* package ‘contiBAIT’ ... ** using staged installation ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c buildLinkageGroups.cpp -o buildLinkageGroups.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c computeSim.cpp -o computeSim.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c orderContigsGreedy.cpp -o orderContigsGreedy.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o contiBAIT.so buildLinkageGroups.o computeSim.o orderContigsGreedy.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/contiBAIT.buildbin-libdir/00LOCK-contiBAIT/00new/contiBAIT/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (contiBAIT) >>>>>>> >>>>>>> FIXING LINKS FOR contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so"