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INSTALL report for cobindR on tokay2

This page was generated on 2019-10-16 12:28:14 -0400 (Wed, 16 Oct 2019).

Package 314/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cobindR 1.22.0
Manuela Benary
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/cobindR
Branch: RELEASE_3_9
Last Commit: bd9a310
Last Changed Date: 2019-05-02 11:53:44 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: cobindR
Version: 1.22.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/cobindR_1.22.0.tar.gz && rm -rf cobindR.buildbin-libdir && mkdir cobindR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cobindR.buildbin-libdir cobindR_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL cobindR_1.22.0.zip && rm cobindR_1.22.0.tar.gz cobindR_1.22.0.zip
StartedAt: 2019-10-15 20:26:09 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:28:15 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 125.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/cobindR_1.22.0.tar.gz && rm -rf cobindR.buildbin-libdir && mkdir cobindR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cobindR.buildbin-libdir cobindR_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL cobindR_1.22.0.zip && rm cobindR_1.22.0.tar.gz cobindR_1.22.0.zip
###
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install for i386

* installing *source* package 'cobindR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'sequence' in package 'cobindR'
Creating a new generic function for 'path' in package 'cobindR'
Creating a new generic function for 'path<-' in package 'cobindR'
Creating a generic function for 'write' from package 'base' in package 'cobindR'
Creating a generic function for 'write.fasta' from package 'seqinr' in package 'cobindR'
** help
*** installing help indices
  converting help for package 'cobindR'
    finding HTML links ... done
    SeqObj-class                            html  
    bg_binding_sites                        html  
    finding level-2 HTML links ... done

    bg_pairs                                html  
    bg_sequence_origin                      html  
    bg_sequence_source                      html  
    bg_sequence_type                        html  
    bg_sequences                            html  
    binding_sites                           html  
    cobindRConfiguration                    html  
    cobindr-class                           html  
    cobindr-internal                        html  
    cobindr-package                         html  
    comment                                 html  
    configuration-class                     html  
    configuration                           html  
    downstream                              html  
    experiment_description                  html  
    fdrThreshold                            html  
    find.pairs                              html  
    get.bindingsite.ranges                  html  
    get.pairs                               html  
    get.significant.pairs                   html  
    id                                      html  
    location                                html  
    mart                                    html  
    max_distance                            html  
    name                                    html  
    pValue                                  html  
    pairs                                   html  
    pairs_of_interest                       html  
    path                                    html  
    pfm                                     html  
    pfm_path                                html  
    plot.detrending                         html  
    plot.gc                                 html  
    plot.pairdistance                       html  
    plot.pairdistribution                   html  
    plot.positionprofile                    html  
    plot.positions                          html  
    plot.positions.simple                   html  
    plot.tfbs.heatmap                       html  
    plot.tfbs.venndiagram                   html  
    plot.tfbslogo                           html  
    predicted2pwm                           html  
    pseudocount                             html  
    rtfbs                                   html  
    search.gadem                            html  
    search.pwm                              html  
    seqObj                                  html  
    sequence                                html  
    sequence_origin                         html  
    sequence_source                         html  
    sequence_type                           html  
    sequences                               html  
    species                                 html  
    testCpG                                 html  
    threshold                               html  
    uid                                     html  
    upstream                                html  
    write.bindingsites                      html  
    write.bindingsites.table                html  
    write.pairs                             html  
    write.sequences                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: multiple methods tables found for 'path'
Warning: multiple methods tables found for 'path<-'
** testing if installed package can be loaded from final location
Warning: multiple methods tables found for 'path'
Warning: multiple methods tables found for 'path<-'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'cobindR' ...
** testing if installed package can be loaded
Warning: multiple methods tables found for 'path'
Warning: multiple methods tables found for 'path<-'
* MD5 sums
packaged installation of 'cobindR' as cobindR_1.22.0.zip
* DONE (cobindR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'cobindR' successfully unpacked and MD5 sums checked