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INSTALL report for TFutils on tokay2

This page was generated on 2019-10-16 12:41:07 -0400 (Wed, 16 Oct 2019).

Package 1643/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TFutils 1.4.0
Shweta Gopaulakrishnan
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/TFutils
Branch: RELEASE_3_9
Last Commit: a2f8f46
Last Changed Date: 2019-05-02 11:54:11 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: TFutils
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/TFutils_1.4.0.tar.gz && rm -rf TFutils.buildbin-libdir && mkdir TFutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TFutils.buildbin-libdir TFutils_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL TFutils_1.4.0.zip && rm TFutils_1.4.0.tar.gz TFutils_1.4.0.zip
StartedAt: 2019-10-15 19:04:03 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:06:18 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 134.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/TFutils_1.4.0.tar.gz && rm -rf TFutils.buildbin-libdir && mkdir TFutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TFutils.buildbin-libdir TFutils_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL TFutils_1.4.0.zip && rm TFutils_1.4.0.tar.gz TFutils_1.4.0.zip
###
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install for i386

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  restoring symbolic link as a file copy
* installing *source* package 'TFutils' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: in method for 'importFIMO' with signature '"TabixFile","GRanges"': no definition for classes "TabixFile", "GRanges"
** help
*** installing help indices
  converting help for package 'TFutils'
    finding HTML links ... done
    HGNCmap                                 html  
    TFCatalog-class                         html  
    TFCatalog                               html  
    TFtargs                                 html  
    URL_s3_tf                               html  
    cisbpTFcat                              html  
    directHitsInCISBP                       html  
    encode690                               html  
    fimo16                                  html  
    fimoMap                                 html  
    genemodForGviz                          html  
    genemodelDF                             html  
    grabTab                                 html  
    gwascat_hg19_chr17                      html  
    hocomoco.mono                           html  
    hocomoco.mono.sep2018                   html  
    importFIMO                              html  
    importFIMO_local_split                  html  
    metadata_tf                             html  
    named_tf                                html  
    setupHIZE                               html  
    show-TFCatalog-method                   html  
    tfhash                                  html  
    tftColl                                 html  
    tftCollMap                              html  
    topTraitsOfTargets                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  restoring symbolic link as a file copy
* installing *source* package 'TFutils' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TFutils' as TFutils_1.4.0.zip
* DONE (TFutils)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'TFutils' successfully unpacked and MD5 sums checked