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INSTALL report for Starr on tokay2

This page was generated on 2019-10-16 12:22:50 -0400 (Wed, 16 Oct 2019).

Package 1595/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Starr 1.40.0
Benedikt Zacher
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/Starr
Branch: RELEASE_3_9
Last Commit: 7c1eff9
Last Changed Date: 2019-05-02 11:53:12 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Starr
Version: 1.40.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Starr_1.40.0.tar.gz && rm -rf Starr.buildbin-libdir && mkdir Starr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Starr.buildbin-libdir Starr_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Starr_1.40.0.zip && rm Starr_1.40.0.tar.gz Starr_1.40.0.zip
StartedAt: 2019-10-15 19:33:12 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:34:32 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 79.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Starr_1.40.0.tar.gz && rm -rf Starr.buildbin-libdir && mkdir Starr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Starr.buildbin-libdir Starr_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Starr_1.40.0.zip && rm Starr_1.40.0.tar.gz Starr_1.40.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  702k  100  702k    0     0  7712k      0 --:--:-- --:--:-- --:--:-- 8362k

install for i386

* installing *source* package 'Starr' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ahocorasick.c -o ahocorasick.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c collect.c -o collect.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c rm_small_peak.c -o rm_small_peak.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c sort_by_genomic.c -o sort_by_genomic.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o Starr.dll tmp.def ahocorasick.o collect.o rm_small_peak.o sort_by_genomic.o -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/Starr.buildbin-libdir/00LOCK-Starr/00new/Starr/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Starr'
    finding HTML links ... done
    RGlist2ExpressionSet                    html  
    backgd.sd                               html  
    bpmapToProbeAnno                        html  
    cmarrt.ma                               html  
    cmarrt.peak                             html  
    correlate                               html  
    correlationPlot                         html  
    declare.bound                           html  
    densityscatter                          html  
    expressionByFeature                     html  
    fill                                    html  
    fillNA                                  html  
    filterGenes                             html  
    getFeatures                             html  
    getIntensites                           html  
    getMeans                                html  
    getProfiles                             html  
    getProfilesByBase                       html  
    getRatio                                html  
    heatmapplot                             html  
    intersection                            html  
    kde2dplot                               html  
    list2matrix                             html  
    ma.stat                                 html  
    makeProbeAnno                           html  
    makeSplines                             html  
    mapFeatures                             html  
    match_ac                                html  
    normalize.Probes                        html  
    plot.Density                            html  
    plot.boxes                              html  
    plot.cmarrt                             html  
    plot.gcBias                             html  
    plot.image                              html  
    plot.ma                                 html  
    plot.posBias                            html  
    plot.ratioScatter                       html  
    plot.scatter                            html  
    plotProfiles                            html  
    profileplot                             html  
    rankPercentile.normalize                html  
    read.gffAnno                            html  
    readCelFile                             html  
    remap                                   html  
    rm.small.peak                           html  
    sameLength                              html  
    singleclusterplot                       html  
    sort.by.genomic                         html  
    substract                               html  
    whichIn                                 html  
    windowxy                                html  
    writeGFF                                html  
    writePosFile                            html  
    writeWIG                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Starr' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ahocorasick.c -o ahocorasick.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c collect.c -o collect.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c rm_small_peak.c -o rm_small_peak.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c sort_by_genomic.c -o sort_by_genomic.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o Starr.dll tmp.def ahocorasick.o collect.o rm_small_peak.o sort_by_genomic.o -LC:/Users/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/Starr.buildbin-libdir/Starr/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Starr' as Starr_1.40.0.zip
* DONE (Starr)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'Starr' successfully unpacked and MD5 sums checked