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INSTALL report for SparseSignatures on tokay2

This page was generated on 2019-10-16 12:41:08 -0400 (Wed, 16 Oct 2019).

Package 1559/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SparseSignatures 1.4.0
Luca De Sano
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/SparseSignatures
Branch: RELEASE_3_9
Last Commit: f3de1de
Last Changed Date: 2019-05-02 11:54:11 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SparseSignatures
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SparseSignatures_1.4.0.tar.gz && rm -rf SparseSignatures.buildbin-libdir && mkdir SparseSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SparseSignatures.buildbin-libdir SparseSignatures_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SparseSignatures_1.4.0.zip && rm SparseSignatures_1.4.0.tar.gz SparseSignatures_1.4.0.zip
StartedAt: 2019-10-15 21:05:12 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 21:06:10 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 58.3 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SparseSignatures_1.4.0.tar.gz && rm -rf SparseSignatures.buildbin-libdir && mkdir SparseSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SparseSignatures.buildbin-libdir SparseSignatures_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SparseSignatures_1.4.0.zip && rm SparseSignatures_1.4.0.tar.gz SparseSignatures_1.4.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  650k  100  650k    0     0  9650k      0 --:--:-- --:--:-- --:--:-- 10.5M

install for i386

* installing *source* package 'SparseSignatures' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SparseSignatures'
    finding HTML links ... done
    as.alpha                                html  
    as.alpha.in.range                       html  
    as.beta                                 html  
    as.beta.in.range                        html  
    as.loglik.progression                   html  
    as.loglik.progression.in.range          html  
    as.mean.squared.error                   html  
    as.starting.beta                        html  
    as.starting.beta.in.range               html  
    background                              html  
    cv_example                              html  
    evaluate.lambda.range                   html  
    import.counts.data                      html  
    lambda_range_example                    html  
    mutation_categories                     html  
    nmf.LassoCV                             html  
    nmf.LassoK                              html  
    nmf_LassoK_example                      html  
    patient.plot                            html  
    patients                                html  
    signatures.plot                         html  
    ssm560_reduced                          html  
    starting.betas.estimation               html  
    starting_betas_example                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SparseSignatures' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SparseSignatures' as SparseSignatures_1.4.0.zip
* DONE (SparseSignatures)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'SparseSignatures' successfully unpacked and MD5 sums checked