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INSTALL report for SeqSQC on tokay2

This page was generated on 2019-10-16 12:39:51 -0400 (Wed, 16 Oct 2019).

Package 1500/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqSQC 1.6.0
Qian Liu
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/SeqSQC
Branch: RELEASE_3_9
Last Commit: 48c3f1b
Last Changed Date: 2019-05-02 11:54:09 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SeqSQC
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SeqSQC_1.6.0.tar.gz && rm -rf SeqSQC.buildbin-libdir && mkdir SeqSQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SeqSQC.buildbin-libdir SeqSQC_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SeqSQC_1.6.0.zip && rm SeqSQC_1.6.0.tar.gz SeqSQC_1.6.0.zip
StartedAt: 2019-10-15 20:01:13 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:02:23 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 69.7 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SeqSQC_1.6.0.tar.gz && rm -rf SeqSQC.buildbin-libdir && mkdir SeqSQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SeqSQC.buildbin-libdir SeqSQC_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SeqSQC_1.6.0.zip && rm SeqSQC_1.6.0.tar.gz SeqSQC_1.6.0.zip
###
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100 3070k  100 3070k    0     0  3789k      0 --:--:-- --:--:-- --:--:-- 3814k

install for i386

* installing *source* package 'SeqSQC' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SeqSQC'
    finding HTML links ... done
    CCDS.Hs37.3.reduced_chr1.bed            html  
    IBDCheck                                html  
    IBDRemove                               html  
    Inbreeding                              html  
    LoadVfile                               html  
    MissingRate                             html  
    PCACheck                                html  
    RenderReport                            html  
    SeqOpen                                 html  
    SeqSQC-class                            html  
    SeqSQC-package                          html  
    SexCheck                                html  
    example.gds                             html  
    example.seqfile.Rdata                   html  
    example_sub.vcf                         html  
    plotQC                                  html  
    problemList                             html  
    sampleAnnotation.txt                    html  
    sampleQC                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SeqSQC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SeqSQC' as SeqSQC_1.6.0.zip
* DONE (SeqSQC)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'SeqSQC' successfully unpacked and MD5 sums checked