Harmen Bussemaker
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/SELEX |
| Branch: RELEASE_3_9 |
| Last Commit: 0776c87 |
| Last Changed Date: 2019-05-02 11:53:53 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:32:29 -0400 (Wed, 16 Oct 2019).
| Package 1484/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SELEX 1.16.0 Harmen Bussemaker
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: SELEX |
| Version: 1.16.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SELEX.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings SELEX_1.16.0.tar.gz |
| StartedAt: 2019-10-16 06:59:15 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 07:02:27 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 191.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SELEX.Rcheck |
| Warnings: 0 |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SELEX.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings SELEX_1.16.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/SELEX.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SELEX/DESCRIPTION' ... OK
* this is package 'SELEX' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SELEX' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
selex.config: no visible global function definition for 'read.table'
selex.config: no visible global function definition for 'write.table'
selex.counts: no visible global function definition for 'flush.console'
selex.infogain: no visible global function definition for
'flush.console'
selex.kmax: no visible global function definition for 'flush.console'
selex.loadCountTable: no visible global function definition for
'flush.console'
selex.mm: no visible global function definition for 'flush.console'
selex.revcomp: no visible global function definition for
'complete.cases'
Undefined global functions or variables:
complete.cases flush.console read.table write.table
Consider adding
importFrom("stats", "complete.cases")
importFrom("utils", "flush.console", "read.table", "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking files in 'vignettes' ... NOTE
The following directory looks like a leftover from 'knitr':
'cache'
Please remove from your package.
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
SELEX 11.74 6.14 19.45
selex.seqfilter 4.11 3.20 7.20
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
SELEX 34.12 5.55 16.47
selex.seqfilter 13.46 2.00 5.86
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/SELEX.Rcheck/00check.log'
for details.
SELEX.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/SELEX_1.16.0.tar.gz && rm -rf SELEX.buildbin-libdir && mkdir SELEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SELEX.buildbin-libdir SELEX_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL SELEX_1.16.0.zip && rm SELEX_1.16.0.tar.gz SELEX_1.16.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1654k 100 1654k 0 0 6803k 0 --:--:-- --:--:-- --:--:-- 6979k
install for i386
* installing *source* package 'SELEX' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SELEX'
finding HTML links ... done
SELEX html
selex.affinities html
selex.config html
selex.countSummary html
selex.counts html
selex.defineSample html
selex.exampledata html
selex.fastqPSFM html
selex.getAttributes html
selex.getRound0 html
selex.getSeqfilter html
selex.infogain html
selex.infogainSummary html
selex.jvmStatus html
selex.kmax html
selex.kmerPSFM html
selex.loadAnnotation html
selex.mm html
selex.mmProb html
selex.mmSummary html
selex.revcomp html
selex.run html
selex.sample html
selex.samplePSFM html
selex.sampleSummary html
selex.saveAnnotation html
selex.seqfilter html
selex.setwd html
selex.split html
selex.summary html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SELEX' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SELEX' as SELEX_1.16.0.zip
* DONE (SELEX)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'SELEX' successfully unpacked and MD5 sums checked
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SELEX.Rcheck/examples_i386/SELEX-Ex.timings
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SELEX.Rcheck/examples_x64/SELEX-Ex.timings
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